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Establishing an 8‐gene immune prognostic model based on TP53 status for lung adenocarcinoma
BACKGROUND: Lung adenocarcinoma (LUAD) results in a majority of cancer burden worldwide. TP53 is the most commonly mutated in LUAD. This study aimed to reveal the relation between TP53 and tumor microenvironment (TME) for improving LUAD treatment. METHODS: Differentially expressed genes (DEGs) relat...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279974/ https://www.ncbi.nlm.nih.gov/pubmed/35689561 http://dx.doi.org/10.1002/jcla.24538 |
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author | Wu, Guodong Wang, Youyu Wan, Yanhui |
author_facet | Wu, Guodong Wang, Youyu Wan, Yanhui |
author_sort | Wu, Guodong |
collection | PubMed |
description | BACKGROUND: Lung adenocarcinoma (LUAD) results in a majority of cancer burden worldwide. TP53 is the most commonly mutated in LUAD. This study aimed to reveal the relation between TP53 and tumor microenvironment (TME) for improving LUAD treatment. METHODS: Differentially expressed genes (DEGs) related to immunity were analyzed between TP53‐WT and TP53‐MUT groups. Least absolute shrinkage and selection operator (LASSO) Cox regression was applied to screen prognostic DEGs. Two independent datasets were included to evaluate the robustness of the prognostic model. RESULTS: An 8‐gene prognostic model containing ANLN, CCNB1, DLGAP5, FAM83A, GJB2, NAPSA, SFTPB, and SLC2A1 was established based on DEGs. LUAD samples were classified into high‐ and low‐risk groups with differential overall survival in the two datasets. M0 macrophages, M1 macrophages, and activated memory CD4 T cells were more enriched in high‐risk group. Immune checkpoints of PDCD1, LAG3, and CD274 were also high‐expressed in high‐risk group. CONCLUSION: The study improved the understanding of the role of TP53 in the TME modulation. The 8‐gene model had robust performance to predict LUAD prognosis in clinical practice. In addition, the eight prognostic genes may also serve as potential targets for designing therapeutic drugs for LUAD patients. |
format | Online Article Text |
id | pubmed-9279974 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92799742022-07-15 Establishing an 8‐gene immune prognostic model based on TP53 status for lung adenocarcinoma Wu, Guodong Wang, Youyu Wan, Yanhui J Clin Lab Anal Research Articles BACKGROUND: Lung adenocarcinoma (LUAD) results in a majority of cancer burden worldwide. TP53 is the most commonly mutated in LUAD. This study aimed to reveal the relation between TP53 and tumor microenvironment (TME) for improving LUAD treatment. METHODS: Differentially expressed genes (DEGs) related to immunity were analyzed between TP53‐WT and TP53‐MUT groups. Least absolute shrinkage and selection operator (LASSO) Cox regression was applied to screen prognostic DEGs. Two independent datasets were included to evaluate the robustness of the prognostic model. RESULTS: An 8‐gene prognostic model containing ANLN, CCNB1, DLGAP5, FAM83A, GJB2, NAPSA, SFTPB, and SLC2A1 was established based on DEGs. LUAD samples were classified into high‐ and low‐risk groups with differential overall survival in the two datasets. M0 macrophages, M1 macrophages, and activated memory CD4 T cells were more enriched in high‐risk group. Immune checkpoints of PDCD1, LAG3, and CD274 were also high‐expressed in high‐risk group. CONCLUSION: The study improved the understanding of the role of TP53 in the TME modulation. The 8‐gene model had robust performance to predict LUAD prognosis in clinical practice. In addition, the eight prognostic genes may also serve as potential targets for designing therapeutic drugs for LUAD patients. John Wiley and Sons Inc. 2022-06-11 /pmc/articles/PMC9279974/ /pubmed/35689561 http://dx.doi.org/10.1002/jcla.24538 Text en © 2022 The Authors. Journal of Clinical Laboratory Analysis published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Wu, Guodong Wang, Youyu Wan, Yanhui Establishing an 8‐gene immune prognostic model based on TP53 status for lung adenocarcinoma |
title | Establishing an 8‐gene immune prognostic model based on TP53 status for lung adenocarcinoma |
title_full | Establishing an 8‐gene immune prognostic model based on TP53 status for lung adenocarcinoma |
title_fullStr | Establishing an 8‐gene immune prognostic model based on TP53 status for lung adenocarcinoma |
title_full_unstemmed | Establishing an 8‐gene immune prognostic model based on TP53 status for lung adenocarcinoma |
title_short | Establishing an 8‐gene immune prognostic model based on TP53 status for lung adenocarcinoma |
title_sort | establishing an 8‐gene immune prognostic model based on tp53 status for lung adenocarcinoma |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9279974/ https://www.ncbi.nlm.nih.gov/pubmed/35689561 http://dx.doi.org/10.1002/jcla.24538 |
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