Cargando…

Detection of cell markers from single cell RNA-seq with sc2marker

BACKGROUND: Single-cell RNA sequencing (scRNA-seq) allows the detection of rare cell types in complex tissues. The detection of markers for rare cell types is useful for further biological analysis of, for example, flow cytometry and imaging data sets for either physical isolation or spatial charact...

Descripción completa

Detalles Bibliográficos
Autores principales:	Li, Ronghui, Banjanin, Bella, Schneider, Rebekka K., Costa, Ivan G.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2022
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9281170/ https://www.ncbi.nlm.nih.gov/pubmed/35831796 http://dx.doi.org/10.1186/s12859-022-04817-5

Ejemplares similares

Mesenchymal Stromal Cells as a Cellular Target in Myeloid Malignancy: Chances and Challenges in the Genome Editing of Stromal Alterations
por: Banjanin, Bella, et al.
Publicado: (2021)

scGate: marker-based purification of cell types from heterogeneous single-cell RNA-seq datasets
por: Andreatta, Massimo, et al.
Publicado: (2022)

CellMarker 2.0: an updated database of manually curated cell markers in human/mouse and web tools based on scRNA-seq data
por: Hu, Congxue, et al.
Publicado: (2022)

Mast cell marker gene signature: prognosis and immunotherapy response prediction in lung adenocarcinoma through integrated scRNA-seq and bulk RNA-seq
por: Zhang, Pengpeng, et al.
Publicado: (2023)

SC3 - consensus clustering of single-cell RNA-Seq data
por: Kiselev, Vladimir Yu., et al.
Publicado: (2017)

scDIOR: single cell RNA-seq data IO software
por: Feng, Huijian, et al.
Publicado: (2022)

scGR-seq: Integrated analysis of glycan and RNA in single cells
por: Odaka, Haruki, et al.
Publicado: (2022)

scBridge embraces cell heterogeneity in single-cell RNA-seq and ATAC-seq data integration
por: Li, Yunfan, et al.
Publicado: (2023)

A rank-based marker selection method for high throughput scRNA-seq data
por: Vargo, Alexander H. S., et al.
Publicado: (2020)

GeneMarkeR: A Database and User Interface for scRNA-seq Marker Genes
por: Paisley, Brianna M., et al.
Publicado: (2021)

scReadSim: a single-cell RNA-seq and ATAC-seq read simulator
por: Yan, Guanao, et al.
Publicado: (2023)

scMRMA: single cell multiresolution marker-based annotation
por: Li, Jia, et al.
Publicado: (2021)

Chromatin-accessibility estimation from single-cell ATAC-seq data with scOpen
por: Li, Zhijian, et al.
Publicado: (2021)

Exploring the single-cell RNA-seq analysis landscape with the scRNA-tools database
por: Zappia, Luke, et al.
Publicado: (2018)

Single-Cell RNA Sequencing (scRNA-seq) in Cardiac Tissue: Applications and Limitations
por: Wang, Mingqiang, et al.
Publicado: (2021)

Effective ribosomal RNA depletion for single-cell total RNA-seq by scDASH
por: Loi, Danson S.C., et al.
Publicado: (2021)

scREAD: A Single-Cell RNA-Seq Database for Alzheimer's Disease
por: Jiang, Jing, et al.
Publicado: (2020)

Evaluation of pulmonary single‐cell identity specificity in scRNA‐seq analysis
por: Liu, Xuanqi, et al.
Publicado: (2022)

scDrug: From single-cell RNA-seq to drug response prediction
por: Hsieh, Chiao-Yu, et al.
Publicado: (2022)

Identification and Validation of NK Marker Genes in Ovarian Cancer by scRNA-seq Combined with WGCNA Algorithm
por: He, Xin, et al.
Publicado: (2023)

scX: A user-friendly tool for scRNA-seq exploration
por: Waichman, Tomás Vega, et al.
Publicado: (2023)

Massively parallel and time-resolved RNA sequencing in single cells with scNT-Seq
por: Qiu, Qi, et al.
Publicado: (2020)

sc-ImmuCC: hierarchical annotation for immune cell types in single-cell RNA-seq
por: Jiang, Ying, et al.
Publicado: (2023)

Detection of m(6)A in single cultured cells using scDART-seq
por: Tegowski, Matthew, et al.
Publicado: (2022)

f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq
por: Buettner, Florian, et al.
Publicado: (2017)

An accurate and robust imputation method scImpute for single-cell RNA-seq data
por: Li, Wei Vivian, et al.
Publicado: (2018)

scIGANs: single-cell RNA-seq imputation using generative adversarial networks
por: Xu, Yungang, et al.
Publicado: (2020)

ScRNA-seq and ST-seq in liver research
por: He, Jia, et al.
Publicado: (2023)

Single-cell mapper (scMappR): using scRNA-seq to infer the cell-type specificities of differentially expressed genes
por: Sokolowski, Dustin J, et al.
Publicado: (2021)

Nanopore sequencing of single-cell transcriptomes with scCOLOR-seq
por: Philpott, Martin, et al.
Publicado: (2021)

Single-Cell Signature Explorer for comprehensive visualization of single cell signatures across scRNA-seq datasets
por: Pont, Frédéric, et al.
Publicado: (2019)

scAPAmod: Profiling Alternative Polyadenylation Modalities in Single Cells from Single-Cell RNA-Seq Data
por: Qian, Lingwu, et al.
Publicado: (2022)

scNCL: transferring labels from scRNA-seq to scATAC-seq data with neighborhood contrastive regularization
por: Yan, Xuhua, et al.
Publicado: (2023)

scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
por: Choi, Ji-Hye, et al.
Publicado: (2020)

Identifying Lung Cancer Cell Markers with Machine Learning Methods and Single-Cell RNA-Seq Data
por: Huang, Guo-Hua, et al.
Publicado: (2021)

scRNABatchQC: multi-samples quality control for single cell RNA-seq data
por: Liu, Qi, et al.
Publicado: (2019)

Ultra-fast scalable estimation of single-cell differentiation potency from scRNA-Seq data
por: Teschendorff, Andrew E, et al.
Publicado: (2020)

scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detection
por: Zhang, Ziqi, et al.
Publicado: (2023)

scDART: integrating unmatched scRNA-seq and scATAC-seq data and learning cross-modality relationship simultaneously
por: Zhang, Ziqi, et al.
Publicado: (2022)

Using topic modeling to detect cellular crosstalk in scRNA-seq
por: Pancheva, Alexandrina, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_nf8bj291d4rpn6ihuubroen82n