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Topology mediates transport of nanoparticles in macromolecular networks

Diffusion transport of nanoparticles in confined environments of macromolecular networks is common in diverse physical systems and regulates many biological responses. Macromolecular networks possess various topologies, featured by different numbers of degrees and genera. Although the network topolo...

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Autores principales: Dai, Xiaobin, Zhang, Xuanyu, Gao, Lijuan, Xu, Ziyang, Yan, Li-Tang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9283426/
https://www.ncbi.nlm.nih.gov/pubmed/35835763
http://dx.doi.org/10.1038/s41467-022-31861-9
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author Dai, Xiaobin
Zhang, Xuanyu
Gao, Lijuan
Xu, Ziyang
Yan, Li-Tang
author_facet Dai, Xiaobin
Zhang, Xuanyu
Gao, Lijuan
Xu, Ziyang
Yan, Li-Tang
author_sort Dai, Xiaobin
collection PubMed
description Diffusion transport of nanoparticles in confined environments of macromolecular networks is common in diverse physical systems and regulates many biological responses. Macromolecular networks possess various topologies, featured by different numbers of degrees and genera. Although the network topologies can be manipulated from a molecular level, how the topology impacts the transport of nanoparticles in macromolecular networks remains unexplored. Here, we develop theoretical approaches combined with simulations to study nanoparticle transport in a model system consisting of network cells with defined topologies. We find that the topology of network cells has a profound effect on the free energy landscape experienced by a nanoparticle in the network cells, exhibiting various scaling laws dictated by the topology. Furthermore, the examination of the impact of cell topology on the detailed behavior of nanoparticle dynamics leads to different dynamical regimes that go beyond the particulars regarding the local network loop. The results might alter the conventional picture of the physical origin of transport in networks.
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spelling pubmed-92834262022-07-16 Topology mediates transport of nanoparticles in macromolecular networks Dai, Xiaobin Zhang, Xuanyu Gao, Lijuan Xu, Ziyang Yan, Li-Tang Nat Commun Article Diffusion transport of nanoparticles in confined environments of macromolecular networks is common in diverse physical systems and regulates many biological responses. Macromolecular networks possess various topologies, featured by different numbers of degrees and genera. Although the network topologies can be manipulated from a molecular level, how the topology impacts the transport of nanoparticles in macromolecular networks remains unexplored. Here, we develop theoretical approaches combined with simulations to study nanoparticle transport in a model system consisting of network cells with defined topologies. We find that the topology of network cells has a profound effect on the free energy landscape experienced by a nanoparticle in the network cells, exhibiting various scaling laws dictated by the topology. Furthermore, the examination of the impact of cell topology on the detailed behavior of nanoparticle dynamics leads to different dynamical regimes that go beyond the particulars regarding the local network loop. The results might alter the conventional picture of the physical origin of transport in networks. Nature Publishing Group UK 2022-07-14 /pmc/articles/PMC9283426/ /pubmed/35835763 http://dx.doi.org/10.1038/s41467-022-31861-9 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Dai, Xiaobin
Zhang, Xuanyu
Gao, Lijuan
Xu, Ziyang
Yan, Li-Tang
Topology mediates transport of nanoparticles in macromolecular networks
title Topology mediates transport of nanoparticles in macromolecular networks
title_full Topology mediates transport of nanoparticles in macromolecular networks
title_fullStr Topology mediates transport of nanoparticles in macromolecular networks
title_full_unstemmed Topology mediates transport of nanoparticles in macromolecular networks
title_short Topology mediates transport of nanoparticles in macromolecular networks
title_sort topology mediates transport of nanoparticles in macromolecular networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9283426/
https://www.ncbi.nlm.nih.gov/pubmed/35835763
http://dx.doi.org/10.1038/s41467-022-31861-9
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