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An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma
The prognosis of patients with cholangiocarcinoma (CCA) is closely related to both immune cell infiltration and mRNA expression. Therefore, we aimed at conducting multi-immune-related gene analyses to improve the prediction of CCA recurrence. Immune-related genes were selected from the Gene Expressi...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9283581/ https://www.ncbi.nlm.nih.gov/pubmed/35847907 http://dx.doi.org/10.3389/fonc.2022.791867 |
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author | Guo, Han Qian, Yihan Yu, Yeping Bi, Yuting Jiao, Junzhe Jiang, Haocheng Yu, Chang Wu, Hailong Shi, Yanjun Kong, Xiaoni |
author_facet | Guo, Han Qian, Yihan Yu, Yeping Bi, Yuting Jiao, Junzhe Jiang, Haocheng Yu, Chang Wu, Hailong Shi, Yanjun Kong, Xiaoni |
author_sort | Guo, Han |
collection | PubMed |
description | The prognosis of patients with cholangiocarcinoma (CCA) is closely related to both immune cell infiltration and mRNA expression. Therefore, we aimed at conducting multi-immune-related gene analyses to improve the prediction of CCA recurrence. Immune-related genes were selected from the Gene Expression Omnibus (GEO), The Cancer Genome Atlas (TCGA), and the Immunology Database and Analysis Portal (ImmPort). The least absolute shrinkage and selection operator (LASSO) regression model was used to establish the multi-gene model that was significantly correlated with the recurrence-free survival (RFS) in two test series. Furthermore, compared with single genes, clinical characteristics, tumor immune dysfunction and exclusion (TIDE), and tumor inflammation signature (TIS), the 8-immune-related differentially expressed genes (8-IRDEGs) signature had a better prediction value. Moreover, the high-risk subgroup had a lower density of B-cell, plasma, B-cell naïve, CD8+ T-cell, CD8+ T-cell naïve, and CD8+ T-cell memory infiltration, as well as more severe immunosuppression and higher mutation counts. In conclusion, the 8-IRDEGs signature was a promising biomarker for distinguishing the prognosis and the molecular and immune features of CCA, and could be beneficial to the individualized immunotherapy for CCA patients. |
format | Online Article Text |
id | pubmed-9283581 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92835812022-07-16 An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma Guo, Han Qian, Yihan Yu, Yeping Bi, Yuting Jiao, Junzhe Jiang, Haocheng Yu, Chang Wu, Hailong Shi, Yanjun Kong, Xiaoni Front Oncol Oncology The prognosis of patients with cholangiocarcinoma (CCA) is closely related to both immune cell infiltration and mRNA expression. Therefore, we aimed at conducting multi-immune-related gene analyses to improve the prediction of CCA recurrence. Immune-related genes were selected from the Gene Expression Omnibus (GEO), The Cancer Genome Atlas (TCGA), and the Immunology Database and Analysis Portal (ImmPort). The least absolute shrinkage and selection operator (LASSO) regression model was used to establish the multi-gene model that was significantly correlated with the recurrence-free survival (RFS) in two test series. Furthermore, compared with single genes, clinical characteristics, tumor immune dysfunction and exclusion (TIDE), and tumor inflammation signature (TIS), the 8-immune-related differentially expressed genes (8-IRDEGs) signature had a better prediction value. Moreover, the high-risk subgroup had a lower density of B-cell, plasma, B-cell naïve, CD8+ T-cell, CD8+ T-cell naïve, and CD8+ T-cell memory infiltration, as well as more severe immunosuppression and higher mutation counts. In conclusion, the 8-IRDEGs signature was a promising biomarker for distinguishing the prognosis and the molecular and immune features of CCA, and could be beneficial to the individualized immunotherapy for CCA patients. Frontiers Media S.A. 2022-07-01 /pmc/articles/PMC9283581/ /pubmed/35847907 http://dx.doi.org/10.3389/fonc.2022.791867 Text en Copyright © 2022 Guo, Qian, Yu, Bi, Jiao, Jiang, Yu, Wu, Shi and Kong https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Guo, Han Qian, Yihan Yu, Yeping Bi, Yuting Jiao, Junzhe Jiang, Haocheng Yu, Chang Wu, Hailong Shi, Yanjun Kong, Xiaoni An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma |
title | An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma |
title_full | An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma |
title_fullStr | An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma |
title_full_unstemmed | An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma |
title_short | An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma |
title_sort | immunity-related gene model predicts prognosis in cholangiocarcinoma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9283581/ https://www.ncbi.nlm.nih.gov/pubmed/35847907 http://dx.doi.org/10.3389/fonc.2022.791867 |
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