Cargando…

An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma

The prognosis of patients with cholangiocarcinoma (CCA) is closely related to both immune cell infiltration and mRNA expression. Therefore, we aimed at conducting multi-immune-related gene analyses to improve the prediction of CCA recurrence. Immune-related genes were selected from the Gene Expressi...

Descripción completa

Detalles Bibliográficos
Autores principales: Guo, Han, Qian, Yihan, Yu, Yeping, Bi, Yuting, Jiao, Junzhe, Jiang, Haocheng, Yu, Chang, Wu, Hailong, Shi, Yanjun, Kong, Xiaoni
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9283581/
https://www.ncbi.nlm.nih.gov/pubmed/35847907
http://dx.doi.org/10.3389/fonc.2022.791867
_version_ 1784747355293089792
author Guo, Han
Qian, Yihan
Yu, Yeping
Bi, Yuting
Jiao, Junzhe
Jiang, Haocheng
Yu, Chang
Wu, Hailong
Shi, Yanjun
Kong, Xiaoni
author_facet Guo, Han
Qian, Yihan
Yu, Yeping
Bi, Yuting
Jiao, Junzhe
Jiang, Haocheng
Yu, Chang
Wu, Hailong
Shi, Yanjun
Kong, Xiaoni
author_sort Guo, Han
collection PubMed
description The prognosis of patients with cholangiocarcinoma (CCA) is closely related to both immune cell infiltration and mRNA expression. Therefore, we aimed at conducting multi-immune-related gene analyses to improve the prediction of CCA recurrence. Immune-related genes were selected from the Gene Expression Omnibus (GEO), The Cancer Genome Atlas (TCGA), and the Immunology Database and Analysis Portal (ImmPort). The least absolute shrinkage and selection operator (LASSO) regression model was used to establish the multi-gene model that was significantly correlated with the recurrence-free survival (RFS) in two test series. Furthermore, compared with single genes, clinical characteristics, tumor immune dysfunction and exclusion (TIDE), and tumor inflammation signature (TIS), the 8-immune-related differentially expressed genes (8-IRDEGs) signature had a better prediction value. Moreover, the high-risk subgroup had a lower density of B-cell, plasma, B-cell naïve, CD8+ T-cell, CD8+ T-cell naïve, and CD8+ T-cell memory infiltration, as well as more severe immunosuppression and higher mutation counts. In conclusion, the 8-IRDEGs signature was a promising biomarker for distinguishing the prognosis and the molecular and immune features of CCA, and could be beneficial to the individualized immunotherapy for CCA patients.
format Online
Article
Text
id pubmed-9283581
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-92835812022-07-16 An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma Guo, Han Qian, Yihan Yu, Yeping Bi, Yuting Jiao, Junzhe Jiang, Haocheng Yu, Chang Wu, Hailong Shi, Yanjun Kong, Xiaoni Front Oncol Oncology The prognosis of patients with cholangiocarcinoma (CCA) is closely related to both immune cell infiltration and mRNA expression. Therefore, we aimed at conducting multi-immune-related gene analyses to improve the prediction of CCA recurrence. Immune-related genes were selected from the Gene Expression Omnibus (GEO), The Cancer Genome Atlas (TCGA), and the Immunology Database and Analysis Portal (ImmPort). The least absolute shrinkage and selection operator (LASSO) regression model was used to establish the multi-gene model that was significantly correlated with the recurrence-free survival (RFS) in two test series. Furthermore, compared with single genes, clinical characteristics, tumor immune dysfunction and exclusion (TIDE), and tumor inflammation signature (TIS), the 8-immune-related differentially expressed genes (8-IRDEGs) signature had a better prediction value. Moreover, the high-risk subgroup had a lower density of B-cell, plasma, B-cell naïve, CD8+ T-cell, CD8+ T-cell naïve, and CD8+ T-cell memory infiltration, as well as more severe immunosuppression and higher mutation counts. In conclusion, the 8-IRDEGs signature was a promising biomarker for distinguishing the prognosis and the molecular and immune features of CCA, and could be beneficial to the individualized immunotherapy for CCA patients. Frontiers Media S.A. 2022-07-01 /pmc/articles/PMC9283581/ /pubmed/35847907 http://dx.doi.org/10.3389/fonc.2022.791867 Text en Copyright © 2022 Guo, Qian, Yu, Bi, Jiao, Jiang, Yu, Wu, Shi and Kong https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Guo, Han
Qian, Yihan
Yu, Yeping
Bi, Yuting
Jiao, Junzhe
Jiang, Haocheng
Yu, Chang
Wu, Hailong
Shi, Yanjun
Kong, Xiaoni
An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma
title An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma
title_full An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma
title_fullStr An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma
title_full_unstemmed An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma
title_short An Immunity-Related Gene Model Predicts Prognosis in Cholangiocarcinoma
title_sort immunity-related gene model predicts prognosis in cholangiocarcinoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9283581/
https://www.ncbi.nlm.nih.gov/pubmed/35847907
http://dx.doi.org/10.3389/fonc.2022.791867
work_keys_str_mv AT guohan animmunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT qianyihan animmunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT yuyeping animmunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT biyuting animmunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT jiaojunzhe animmunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT jianghaocheng animmunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT yuchang animmunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT wuhailong animmunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT shiyanjun animmunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT kongxiaoni animmunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT guohan immunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT qianyihan immunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT yuyeping immunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT biyuting immunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT jiaojunzhe immunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT jianghaocheng immunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT yuchang immunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT wuhailong immunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT shiyanjun immunityrelatedgenemodelpredictsprognosisincholangiocarcinoma
AT kongxiaoni immunityrelatedgenemodelpredictsprognosisincholangiocarcinoma