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The draft genome sequence of the Brahminy blindsnake Indotyphlops braminus

Blindsnakes of infraoder Scolecophidia (order Squamata) are the most basal group of extant snakes, comprising of more than 450 species with ecological and morphological features highly specialized to underground living. The Brahminy blindsnake, Indotyphlops braminus, is the only known obligate parth...

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Autores principales: Khedkar, Gulab, Kambayashi, Chiaki, Tabata, Hiromasa, Takemura, Ikuyo, Minei, Ryuhei, Ogura, Atsushi, Kurabayashi, Atsushi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9287396/
https://www.ncbi.nlm.nih.gov/pubmed/35840572
http://dx.doi.org/10.1038/s41597-022-01530-z
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author Khedkar, Gulab
Kambayashi, Chiaki
Tabata, Hiromasa
Takemura, Ikuyo
Minei, Ryuhei
Ogura, Atsushi
Kurabayashi, Atsushi
author_facet Khedkar, Gulab
Kambayashi, Chiaki
Tabata, Hiromasa
Takemura, Ikuyo
Minei, Ryuhei
Ogura, Atsushi
Kurabayashi, Atsushi
author_sort Khedkar, Gulab
collection PubMed
description Blindsnakes of infraoder Scolecophidia (order Squamata) are the most basal group of extant snakes, comprising of more than 450 species with ecological and morphological features highly specialized to underground living. The Brahminy blindsnake, Indotyphlops braminus, is the only known obligate parthenogenetic species of snakes. Although the origin of I. braminus is thought to be South Asia, this snake has attracted worldwide attention as an alien species, as it has been introduced to all continents except Antarctica. In this study, we present the first draft genome assembly and annotation of I. braminus. We generated approximately 480 Gbp of sequencing data and produced a draft genome with a total length of 1.86 Gbp and N50 scaffold size of 1.25 Mbp containing 89.3% of orthologs conserved in Sauropsida. We also identified 0.98 Gbp (52.82%) of repetitive genome sequences and a total of 23,560 protein-coding genes. The first draft genome of I. braminus will facilitate further study of snake evolution as well as help to understand the emergence mechanism of parthenogenetic vertebrates.
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spelling pubmed-92873962022-07-17 The draft genome sequence of the Brahminy blindsnake Indotyphlops braminus Khedkar, Gulab Kambayashi, Chiaki Tabata, Hiromasa Takemura, Ikuyo Minei, Ryuhei Ogura, Atsushi Kurabayashi, Atsushi Sci Data Data Descriptor Blindsnakes of infraoder Scolecophidia (order Squamata) are the most basal group of extant snakes, comprising of more than 450 species with ecological and morphological features highly specialized to underground living. The Brahminy blindsnake, Indotyphlops braminus, is the only known obligate parthenogenetic species of snakes. Although the origin of I. braminus is thought to be South Asia, this snake has attracted worldwide attention as an alien species, as it has been introduced to all continents except Antarctica. In this study, we present the first draft genome assembly and annotation of I. braminus. We generated approximately 480 Gbp of sequencing data and produced a draft genome with a total length of 1.86 Gbp and N50 scaffold size of 1.25 Mbp containing 89.3% of orthologs conserved in Sauropsida. We also identified 0.98 Gbp (52.82%) of repetitive genome sequences and a total of 23,560 protein-coding genes. The first draft genome of I. braminus will facilitate further study of snake evolution as well as help to understand the emergence mechanism of parthenogenetic vertebrates. Nature Publishing Group UK 2022-07-15 /pmc/articles/PMC9287396/ /pubmed/35840572 http://dx.doi.org/10.1038/s41597-022-01530-z Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Khedkar, Gulab
Kambayashi, Chiaki
Tabata, Hiromasa
Takemura, Ikuyo
Minei, Ryuhei
Ogura, Atsushi
Kurabayashi, Atsushi
The draft genome sequence of the Brahminy blindsnake Indotyphlops braminus
title The draft genome sequence of the Brahminy blindsnake Indotyphlops braminus
title_full The draft genome sequence of the Brahminy blindsnake Indotyphlops braminus
title_fullStr The draft genome sequence of the Brahminy blindsnake Indotyphlops braminus
title_full_unstemmed The draft genome sequence of the Brahminy blindsnake Indotyphlops braminus
title_short The draft genome sequence of the Brahminy blindsnake Indotyphlops braminus
title_sort draft genome sequence of the brahminy blindsnake indotyphlops braminus
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9287396/
https://www.ncbi.nlm.nih.gov/pubmed/35840572
http://dx.doi.org/10.1038/s41597-022-01530-z
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