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Making marine image data FAIR

Underwater images are used to explore and monitor ocean habitats, generating huge datasets with unusual data characteristics that preclude traditional data management strategies. Due to the lack of universally adopted data standards, image data collected from the marine environment are increasing in...

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Autores principales: Schoening, Timm, Durden, Jennifer M., Faber, Claas, Felden, Janine, Heger, Karl, Hoving, Henk-Jan T., Kiko, Rainer, Köser, Kevin, Krämmer, Christopher, Kwasnitschka, Tom, Möller, Klas Ove, Nakath, David, Naß, Andrea, Nattkemper, Tim W., Purser, Autun, Zurowietz, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9287444/
https://www.ncbi.nlm.nih.gov/pubmed/35840583
http://dx.doi.org/10.1038/s41597-022-01491-3
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author Schoening, Timm
Durden, Jennifer M.
Faber, Claas
Felden, Janine
Heger, Karl
Hoving, Henk-Jan T.
Kiko, Rainer
Köser, Kevin
Krämmer, Christopher
Kwasnitschka, Tom
Möller, Klas Ove
Nakath, David
Naß, Andrea
Nattkemper, Tim W.
Purser, Autun
Zurowietz, Martin
author_facet Schoening, Timm
Durden, Jennifer M.
Faber, Claas
Felden, Janine
Heger, Karl
Hoving, Henk-Jan T.
Kiko, Rainer
Köser, Kevin
Krämmer, Christopher
Kwasnitschka, Tom
Möller, Klas Ove
Nakath, David
Naß, Andrea
Nattkemper, Tim W.
Purser, Autun
Zurowietz, Martin
author_sort Schoening, Timm
collection PubMed
description Underwater images are used to explore and monitor ocean habitats, generating huge datasets with unusual data characteristics that preclude traditional data management strategies. Due to the lack of universally adopted data standards, image data collected from the marine environment are increasing in heterogeneity, preventing objective comparison. The extraction of actionable information thus remains challenging, particularly for researchers not directly involved with the image data collection. Standardized formats and procedures are needed to enable sustainable image analysis and processing tools, as are solutions for image publication in long-term repositories to ascertain reuse of data. The FAIR principles (Findable, Accessible, Interoperable, Reusable) provide a framework for such data management goals. We propose the use of image FAIR Digital Objects (iFDOs) and present an infrastructure environment to create and exploit such FAIR digital objects. We show how these iFDOs can be created, validated, managed and stored, and which data associated with imagery should be curated. The goal is to reduce image management overheads while simultaneously creating visibility for image acquisition and publication efforts.
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spelling pubmed-92874442022-07-17 Making marine image data FAIR Schoening, Timm Durden, Jennifer M. Faber, Claas Felden, Janine Heger, Karl Hoving, Henk-Jan T. Kiko, Rainer Köser, Kevin Krämmer, Christopher Kwasnitschka, Tom Möller, Klas Ove Nakath, David Naß, Andrea Nattkemper, Tim W. Purser, Autun Zurowietz, Martin Sci Data Article Underwater images are used to explore and monitor ocean habitats, generating huge datasets with unusual data characteristics that preclude traditional data management strategies. Due to the lack of universally adopted data standards, image data collected from the marine environment are increasing in heterogeneity, preventing objective comparison. The extraction of actionable information thus remains challenging, particularly for researchers not directly involved with the image data collection. Standardized formats and procedures are needed to enable sustainable image analysis and processing tools, as are solutions for image publication in long-term repositories to ascertain reuse of data. The FAIR principles (Findable, Accessible, Interoperable, Reusable) provide a framework for such data management goals. We propose the use of image FAIR Digital Objects (iFDOs) and present an infrastructure environment to create and exploit such FAIR digital objects. We show how these iFDOs can be created, validated, managed and stored, and which data associated with imagery should be curated. The goal is to reduce image management overheads while simultaneously creating visibility for image acquisition and publication efforts. Nature Publishing Group UK 2022-07-15 /pmc/articles/PMC9287444/ /pubmed/35840583 http://dx.doi.org/10.1038/s41597-022-01491-3 Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Schoening, Timm
Durden, Jennifer M.
Faber, Claas
Felden, Janine
Heger, Karl
Hoving, Henk-Jan T.
Kiko, Rainer
Köser, Kevin
Krämmer, Christopher
Kwasnitschka, Tom
Möller, Klas Ove
Nakath, David
Naß, Andrea
Nattkemper, Tim W.
Purser, Autun
Zurowietz, Martin
Making marine image data FAIR
title Making marine image data FAIR
title_full Making marine image data FAIR
title_fullStr Making marine image data FAIR
title_full_unstemmed Making marine image data FAIR
title_short Making marine image data FAIR
title_sort making marine image data fair
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9287444/
https://www.ncbi.nlm.nih.gov/pubmed/35840583
http://dx.doi.org/10.1038/s41597-022-01491-3
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