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Making marine image data FAIR
Underwater images are used to explore and monitor ocean habitats, generating huge datasets with unusual data characteristics that preclude traditional data management strategies. Due to the lack of universally adopted data standards, image data collected from the marine environment are increasing in...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9287444/ https://www.ncbi.nlm.nih.gov/pubmed/35840583 http://dx.doi.org/10.1038/s41597-022-01491-3 |
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author | Schoening, Timm Durden, Jennifer M. Faber, Claas Felden, Janine Heger, Karl Hoving, Henk-Jan T. Kiko, Rainer Köser, Kevin Krämmer, Christopher Kwasnitschka, Tom Möller, Klas Ove Nakath, David Naß, Andrea Nattkemper, Tim W. Purser, Autun Zurowietz, Martin |
author_facet | Schoening, Timm Durden, Jennifer M. Faber, Claas Felden, Janine Heger, Karl Hoving, Henk-Jan T. Kiko, Rainer Köser, Kevin Krämmer, Christopher Kwasnitschka, Tom Möller, Klas Ove Nakath, David Naß, Andrea Nattkemper, Tim W. Purser, Autun Zurowietz, Martin |
author_sort | Schoening, Timm |
collection | PubMed |
description | Underwater images are used to explore and monitor ocean habitats, generating huge datasets with unusual data characteristics that preclude traditional data management strategies. Due to the lack of universally adopted data standards, image data collected from the marine environment are increasing in heterogeneity, preventing objective comparison. The extraction of actionable information thus remains challenging, particularly for researchers not directly involved with the image data collection. Standardized formats and procedures are needed to enable sustainable image analysis and processing tools, as are solutions for image publication in long-term repositories to ascertain reuse of data. The FAIR principles (Findable, Accessible, Interoperable, Reusable) provide a framework for such data management goals. We propose the use of image FAIR Digital Objects (iFDOs) and present an infrastructure environment to create and exploit such FAIR digital objects. We show how these iFDOs can be created, validated, managed and stored, and which data associated with imagery should be curated. The goal is to reduce image management overheads while simultaneously creating visibility for image acquisition and publication efforts. |
format | Online Article Text |
id | pubmed-9287444 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-92874442022-07-17 Making marine image data FAIR Schoening, Timm Durden, Jennifer M. Faber, Claas Felden, Janine Heger, Karl Hoving, Henk-Jan T. Kiko, Rainer Köser, Kevin Krämmer, Christopher Kwasnitschka, Tom Möller, Klas Ove Nakath, David Naß, Andrea Nattkemper, Tim W. Purser, Autun Zurowietz, Martin Sci Data Article Underwater images are used to explore and monitor ocean habitats, generating huge datasets with unusual data characteristics that preclude traditional data management strategies. Due to the lack of universally adopted data standards, image data collected from the marine environment are increasing in heterogeneity, preventing objective comparison. The extraction of actionable information thus remains challenging, particularly for researchers not directly involved with the image data collection. Standardized formats and procedures are needed to enable sustainable image analysis and processing tools, as are solutions for image publication in long-term repositories to ascertain reuse of data. The FAIR principles (Findable, Accessible, Interoperable, Reusable) provide a framework for such data management goals. We propose the use of image FAIR Digital Objects (iFDOs) and present an infrastructure environment to create and exploit such FAIR digital objects. We show how these iFDOs can be created, validated, managed and stored, and which data associated with imagery should be curated. The goal is to reduce image management overheads while simultaneously creating visibility for image acquisition and publication efforts. Nature Publishing Group UK 2022-07-15 /pmc/articles/PMC9287444/ /pubmed/35840583 http://dx.doi.org/10.1038/s41597-022-01491-3 Text en © The Author(s) 2022, corrected publication 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Schoening, Timm Durden, Jennifer M. Faber, Claas Felden, Janine Heger, Karl Hoving, Henk-Jan T. Kiko, Rainer Köser, Kevin Krämmer, Christopher Kwasnitschka, Tom Möller, Klas Ove Nakath, David Naß, Andrea Nattkemper, Tim W. Purser, Autun Zurowietz, Martin Making marine image data FAIR |
title | Making marine image data FAIR |
title_full | Making marine image data FAIR |
title_fullStr | Making marine image data FAIR |
title_full_unstemmed | Making marine image data FAIR |
title_short | Making marine image data FAIR |
title_sort | making marine image data fair |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9287444/ https://www.ncbi.nlm.nih.gov/pubmed/35840583 http://dx.doi.org/10.1038/s41597-022-01491-3 |
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