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motilitAI: A machine learning framework for automatic prediction of human sperm motility
In this article, human semen samples from the Visem dataset are automatically assessed with machine learning methods for their quality with respect to sperm motility. Several regression models are trained to automatically predict the percentage (0–100) of progressive, non-progressive, and immotile s...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9287611/ https://www.ncbi.nlm.nih.gov/pubmed/35856034 http://dx.doi.org/10.1016/j.isci.2022.104644 |
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author | Ottl, Sandra Amiriparian, Shahin Gerczuk, Maurice Schuller, Björn W. |
author_facet | Ottl, Sandra Amiriparian, Shahin Gerczuk, Maurice Schuller, Björn W. |
author_sort | Ottl, Sandra |
collection | PubMed |
description | In this article, human semen samples from the Visem dataset are automatically assessed with machine learning methods for their quality with respect to sperm motility. Several regression models are trained to automatically predict the percentage (0–100) of progressive, non-progressive, and immotile spermatozoa. The videos are adopted for unsupervised tracking and two different feature extraction methods—in particular custom movement statistics and displacement features. We train multiple neural networks and support vector regression models on the extracted features. Best results are achieved using a linear Support Vector Regressor with an aggregated and quantized representation of individual displacement features of each sperm cell. Compared to the best submission of the Medico Multimedia for Medicine challenge, which used the same dataset and splits, the mean absolute error (MAE) could be reduced from 8.83 to 7.31. We provide the source code for our experiments on GitHub (Code available at: https://github.com/EIHW/motilitAI). |
format | Online Article Text |
id | pubmed-9287611 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-92876112022-07-17 motilitAI: A machine learning framework for automatic prediction of human sperm motility Ottl, Sandra Amiriparian, Shahin Gerczuk, Maurice Schuller, Björn W. iScience Article In this article, human semen samples from the Visem dataset are automatically assessed with machine learning methods for their quality with respect to sperm motility. Several regression models are trained to automatically predict the percentage (0–100) of progressive, non-progressive, and immotile spermatozoa. The videos are adopted for unsupervised tracking and two different feature extraction methods—in particular custom movement statistics and displacement features. We train multiple neural networks and support vector regression models on the extracted features. Best results are achieved using a linear Support Vector Regressor with an aggregated and quantized representation of individual displacement features of each sperm cell. Compared to the best submission of the Medico Multimedia for Medicine challenge, which used the same dataset and splits, the mean absolute error (MAE) could be reduced from 8.83 to 7.31. We provide the source code for our experiments on GitHub (Code available at: https://github.com/EIHW/motilitAI). Elsevier 2022-06-20 /pmc/articles/PMC9287611/ /pubmed/35856034 http://dx.doi.org/10.1016/j.isci.2022.104644 Text en © 2022. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Ottl, Sandra Amiriparian, Shahin Gerczuk, Maurice Schuller, Björn W. motilitAI: A machine learning framework for automatic prediction of human sperm motility |
title | motilitAI: A machine learning framework for automatic prediction of human sperm motility |
title_full | motilitAI: A machine learning framework for automatic prediction of human sperm motility |
title_fullStr | motilitAI: A machine learning framework for automatic prediction of human sperm motility |
title_full_unstemmed | motilitAI: A machine learning framework for automatic prediction of human sperm motility |
title_short | motilitAI: A machine learning framework for automatic prediction of human sperm motility |
title_sort | motilitai: a machine learning framework for automatic prediction of human sperm motility |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9287611/ https://www.ncbi.nlm.nih.gov/pubmed/35856034 http://dx.doi.org/10.1016/j.isci.2022.104644 |
work_keys_str_mv | AT ottlsandra motilitaiamachinelearningframeworkforautomaticpredictionofhumanspermmotility AT amiriparianshahin motilitaiamachinelearningframeworkforautomaticpredictionofhumanspermmotility AT gerczukmaurice motilitaiamachinelearningframeworkforautomaticpredictionofhumanspermmotility AT schullerbjornw motilitaiamachinelearningframeworkforautomaticpredictionofhumanspermmotility |