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Accurate classification of white blood cells by coupling pre-trained ResNet and DenseNet with SCAM mechanism

BACKGROUND: Via counting the different kinds of white blood cells (WBCs), a good quantitative description of a person’s health status is obtained, thus forming the critical aspects for the early treatment of several diseases. Thereby, correct classification of WBCs is crucial. Unfortunately, the man...

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Autores principales: Chen, Hua, Liu, Juan, Hua, Chunbing, Feng, Jing, Pang, Baochuan, Cao, Dehua, Li, Cheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9287918/
https://www.ncbi.nlm.nih.gov/pubmed/35840897
http://dx.doi.org/10.1186/s12859-022-04824-6
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author Chen, Hua
Liu, Juan
Hua, Chunbing
Feng, Jing
Pang, Baochuan
Cao, Dehua
Li, Cheng
author_facet Chen, Hua
Liu, Juan
Hua, Chunbing
Feng, Jing
Pang, Baochuan
Cao, Dehua
Li, Cheng
author_sort Chen, Hua
collection PubMed
description BACKGROUND: Via counting the different kinds of white blood cells (WBCs), a good quantitative description of a person’s health status is obtained, thus forming the critical aspects for the early treatment of several diseases. Thereby, correct classification of WBCs is crucial. Unfortunately, the manual microscopic evaluation is complicated, time-consuming, and subjective, so its statistical reliability becomes limited. Hence, the automatic and accurate identification of WBCs is of great benefit. However, the similarity between WBC samples and the imbalance and insufficiency of samples in the field of medical computer vision bring challenges to intelligent and accurate classification of WBCs. To tackle these challenges, this study proposes a deep learning framework by coupling the pre-trained ResNet and DenseNet with SCAM (spatial and channel attention module) for accurately classifying WBCs. RESULTS: In the proposed network, ResNet and DenseNet enables information reusage and new information exploration, respectively, which are both important and compatible for learning good representations. Meanwhile, the SCAM module sequentially infers attention maps from two separate dimensions of space and channel to emphasize important information or suppress unnecessary information, further enhancing the representation power of our model for WBCs to overcome the limitation of sample similarity. Moreover, the data augmentation and transfer learning techniques are used to handle the data of imbalance and insufficiency. In addition, the mixup approach is adopted for modeling the vicinity relation across training samples of different categories to increase the generalizability of the model. By comparing with five representative networks on our developed LDWBC dataset and the publicly available LISC, BCCD, and Raabin WBC datasets, our model achieves the best overall performance. We also implement the occlusion testing by the gradient-weighted class activation mapping (Grad-CAM) algorithm to improve the interpretability of our model. CONCLUSION: The proposed method has great potential for application in intelligent and accurate classification of WBCs.
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spelling pubmed-92879182022-07-17 Accurate classification of white blood cells by coupling pre-trained ResNet and DenseNet with SCAM mechanism Chen, Hua Liu, Juan Hua, Chunbing Feng, Jing Pang, Baochuan Cao, Dehua Li, Cheng BMC Bioinformatics Research BACKGROUND: Via counting the different kinds of white blood cells (WBCs), a good quantitative description of a person’s health status is obtained, thus forming the critical aspects for the early treatment of several diseases. Thereby, correct classification of WBCs is crucial. Unfortunately, the manual microscopic evaluation is complicated, time-consuming, and subjective, so its statistical reliability becomes limited. Hence, the automatic and accurate identification of WBCs is of great benefit. However, the similarity between WBC samples and the imbalance and insufficiency of samples in the field of medical computer vision bring challenges to intelligent and accurate classification of WBCs. To tackle these challenges, this study proposes a deep learning framework by coupling the pre-trained ResNet and DenseNet with SCAM (spatial and channel attention module) for accurately classifying WBCs. RESULTS: In the proposed network, ResNet and DenseNet enables information reusage and new information exploration, respectively, which are both important and compatible for learning good representations. Meanwhile, the SCAM module sequentially infers attention maps from two separate dimensions of space and channel to emphasize important information or suppress unnecessary information, further enhancing the representation power of our model for WBCs to overcome the limitation of sample similarity. Moreover, the data augmentation and transfer learning techniques are used to handle the data of imbalance and insufficiency. In addition, the mixup approach is adopted for modeling the vicinity relation across training samples of different categories to increase the generalizability of the model. By comparing with five representative networks on our developed LDWBC dataset and the publicly available LISC, BCCD, and Raabin WBC datasets, our model achieves the best overall performance. We also implement the occlusion testing by the gradient-weighted class activation mapping (Grad-CAM) algorithm to improve the interpretability of our model. CONCLUSION: The proposed method has great potential for application in intelligent and accurate classification of WBCs. BioMed Central 2022-07-15 /pmc/articles/PMC9287918/ /pubmed/35840897 http://dx.doi.org/10.1186/s12859-022-04824-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Chen, Hua
Liu, Juan
Hua, Chunbing
Feng, Jing
Pang, Baochuan
Cao, Dehua
Li, Cheng
Accurate classification of white blood cells by coupling pre-trained ResNet and DenseNet with SCAM mechanism
title Accurate classification of white blood cells by coupling pre-trained ResNet and DenseNet with SCAM mechanism
title_full Accurate classification of white blood cells by coupling pre-trained ResNet and DenseNet with SCAM mechanism
title_fullStr Accurate classification of white blood cells by coupling pre-trained ResNet and DenseNet with SCAM mechanism
title_full_unstemmed Accurate classification of white blood cells by coupling pre-trained ResNet and DenseNet with SCAM mechanism
title_short Accurate classification of white blood cells by coupling pre-trained ResNet and DenseNet with SCAM mechanism
title_sort accurate classification of white blood cells by coupling pre-trained resnet and densenet with scam mechanism
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9287918/
https://www.ncbi.nlm.nih.gov/pubmed/35840897
http://dx.doi.org/10.1186/s12859-022-04824-6
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