Cargando…
A Novel M6A-Related Genes Signature Can Impact the Immune Status and Predict the Prognosis and Drug Sensitivity of Lung Adenocarcinoma
Lung adenocarcinoma (LUAD) is a primary cause of cancer-related death around the world and has a poor outcome and high incidence. Treatment options are, however, restricted. One of the most critical factors in cancer and metastasis is the N6-methyladenine (m6A) alteration on RNA. This modification c...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9289247/ https://www.ncbi.nlm.nih.gov/pubmed/35860262 http://dx.doi.org/10.3389/fimmu.2022.923533 |
_version_ | 1784748622223507456 |
---|---|
author | Wang, Xuewen Zhao, Chengfei Huang, Dandan Liu, Zhoujie Liu, Mengmeng Lin, Fei Lu, Yingyu Jia, Jing Lin, Liqing Lin, Xinhua Li, Huangyuan Chen, Zhiwei |
author_facet | Wang, Xuewen Zhao, Chengfei Huang, Dandan Liu, Zhoujie Liu, Mengmeng Lin, Fei Lu, Yingyu Jia, Jing Lin, Liqing Lin, Xinhua Li, Huangyuan Chen, Zhiwei |
author_sort | Wang, Xuewen |
collection | PubMed |
description | Lung adenocarcinoma (LUAD) is a primary cause of cancer-related death around the world and has a poor outcome and high incidence. Treatment options are, however, restricted. One of the most critical factors in cancer and metastasis is the N6-methyladenine (m6A) alteration on RNA. This modification could alter gene expression and even function at numerous levels, such as the stability, translocation and translation of RNA splicing. This study aimed to construct an m6A-related genes signature to accurately predict the prognosis of LUAD patients. From TCGA datasets, the LUAD patient data and m6A-related genes were retrieved. LUAD patients’ mutational features and differentially expressed genes (DEGs) were investigated. An univariate and LASSO model with m6A-related genes were constructed for the prediction of outcomes in LUAD. It was possible to develop a prognostic nomogram that could quantitatively predict LUAD patients’ overall survival chances at 1, 3, and 5 years. Research into biological processes and cell pathways was carried out using GSEA. This study found six m6A-related DEGs in LUAD patients, and three of these DEGs(HNRNPC, IGFBP3 and IGF2BP1) were linked to the clinical outcomes of LUAD patients. We found that the overall survival rate for all LUAD patients with high-risk subgroup was considerably lower. According to ROC curves, the prognostic signature demonstrated a high degree of accuracy in predicting future outcomes. In addition, we created a novel nomogram achieved great accuracy with this one as well. The researchers also found that the novel signature might favorably modulate the immune response, and high-risk scores samples were more susceptible to numerous chemotherapeutic medicines. Overall, we developed a m6A-related gene prognostic signature that effectively predicted outcomes of LUAD patients and gave an immunological perspective for creating customized therapeutics. |
format | Online Article Text |
id | pubmed-9289247 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92892472022-07-19 A Novel M6A-Related Genes Signature Can Impact the Immune Status and Predict the Prognosis and Drug Sensitivity of Lung Adenocarcinoma Wang, Xuewen Zhao, Chengfei Huang, Dandan Liu, Zhoujie Liu, Mengmeng Lin, Fei Lu, Yingyu Jia, Jing Lin, Liqing Lin, Xinhua Li, Huangyuan Chen, Zhiwei Front Immunol Immunology Lung adenocarcinoma (LUAD) is a primary cause of cancer-related death around the world and has a poor outcome and high incidence. Treatment options are, however, restricted. One of the most critical factors in cancer and metastasis is the N6-methyladenine (m6A) alteration on RNA. This modification could alter gene expression and even function at numerous levels, such as the stability, translocation and translation of RNA splicing. This study aimed to construct an m6A-related genes signature to accurately predict the prognosis of LUAD patients. From TCGA datasets, the LUAD patient data and m6A-related genes were retrieved. LUAD patients’ mutational features and differentially expressed genes (DEGs) were investigated. An univariate and LASSO model with m6A-related genes were constructed for the prediction of outcomes in LUAD. It was possible to develop a prognostic nomogram that could quantitatively predict LUAD patients’ overall survival chances at 1, 3, and 5 years. Research into biological processes and cell pathways was carried out using GSEA. This study found six m6A-related DEGs in LUAD patients, and three of these DEGs(HNRNPC, IGFBP3 and IGF2BP1) were linked to the clinical outcomes of LUAD patients. We found that the overall survival rate for all LUAD patients with high-risk subgroup was considerably lower. According to ROC curves, the prognostic signature demonstrated a high degree of accuracy in predicting future outcomes. In addition, we created a novel nomogram achieved great accuracy with this one as well. The researchers also found that the novel signature might favorably modulate the immune response, and high-risk scores samples were more susceptible to numerous chemotherapeutic medicines. Overall, we developed a m6A-related gene prognostic signature that effectively predicted outcomes of LUAD patients and gave an immunological perspective for creating customized therapeutics. Frontiers Media S.A. 2022-07-04 /pmc/articles/PMC9289247/ /pubmed/35860262 http://dx.doi.org/10.3389/fimmu.2022.923533 Text en Copyright © 2022 Wang, Zhao, Huang, Liu, Liu, Lin, Lu, Jia, Lin, Lin, Li and Chen https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Wang, Xuewen Zhao, Chengfei Huang, Dandan Liu, Zhoujie Liu, Mengmeng Lin, Fei Lu, Yingyu Jia, Jing Lin, Liqing Lin, Xinhua Li, Huangyuan Chen, Zhiwei A Novel M6A-Related Genes Signature Can Impact the Immune Status and Predict the Prognosis and Drug Sensitivity of Lung Adenocarcinoma |
title | A Novel M6A-Related Genes Signature Can Impact the Immune Status and Predict the Prognosis and Drug Sensitivity of Lung Adenocarcinoma |
title_full | A Novel M6A-Related Genes Signature Can Impact the Immune Status and Predict the Prognosis and Drug Sensitivity of Lung Adenocarcinoma |
title_fullStr | A Novel M6A-Related Genes Signature Can Impact the Immune Status and Predict the Prognosis and Drug Sensitivity of Lung Adenocarcinoma |
title_full_unstemmed | A Novel M6A-Related Genes Signature Can Impact the Immune Status and Predict the Prognosis and Drug Sensitivity of Lung Adenocarcinoma |
title_short | A Novel M6A-Related Genes Signature Can Impact the Immune Status and Predict the Prognosis and Drug Sensitivity of Lung Adenocarcinoma |
title_sort | novel m6a-related genes signature can impact the immune status and predict the prognosis and drug sensitivity of lung adenocarcinoma |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9289247/ https://www.ncbi.nlm.nih.gov/pubmed/35860262 http://dx.doi.org/10.3389/fimmu.2022.923533 |
work_keys_str_mv | AT wangxuewen anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT zhaochengfei anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT huangdandan anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT liuzhoujie anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT liumengmeng anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT linfei anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT luyingyu anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT jiajing anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT linliqing anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT linxinhua anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT lihuangyuan anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT chenzhiwei anovelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT wangxuewen novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT zhaochengfei novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT huangdandan novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT liuzhoujie novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT liumengmeng novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT linfei novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT luyingyu novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT jiajing novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT linliqing novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT linxinhua novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT lihuangyuan novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma AT chenzhiwei novelm6arelatedgenessignaturecanimpacttheimmunestatusandpredicttheprognosisanddrugsensitivityoflungadenocarcinoma |