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Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations

[Image: see text] The effect of the environment on the guanine redox potential is studied by means of a theoretical–computational approach. Our data, in agreement with previous experimental findings, clearly show that the presence of consecutive guanine bases in both single- and double-stranded DNA...

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Detalles Bibliográficos
Autores principales: Nardi, Alessandro Nicola, Olivieri, Alessio, D’Abramo, Marco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9289878/
https://www.ncbi.nlm.nih.gov/pubmed/35671051
http://dx.doi.org/10.1021/acs.jpcb.2c02391
Descripción
Sumario:[Image: see text] The effect of the environment on the guanine redox potential is studied by means of a theoretical–computational approach. Our data, in agreement with previous experimental findings, clearly show that the presence of consecutive guanine bases in both single- and double-stranded DNA oligomers lowers their reduction potential. Such an effect is even more marked when a G-rich quadruplex is considered, where the oxidized form of guanine is particularly stabilized. To the best of our knowledge, this is the first computational study reporting on a quantitative estimate of the dependence of the guanine redox potential on sequence and conformational effects in complex DNA molecules, ranging from single-stranded DNA to G-quadruplex.