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Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations
[Image: see text] The effect of the environment on the guanine redox potential is studied by means of a theoretical–computational approach. Our data, in agreement with previous experimental findings, clearly show that the presence of consecutive guanine bases in both single- and double-stranded DNA...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9289878/ https://www.ncbi.nlm.nih.gov/pubmed/35671051 http://dx.doi.org/10.1021/acs.jpcb.2c02391 |
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author | Nardi, Alessandro Nicola Olivieri, Alessio D’Abramo, Marco |
author_facet | Nardi, Alessandro Nicola Olivieri, Alessio D’Abramo, Marco |
author_sort | Nardi, Alessandro Nicola |
collection | PubMed |
description | [Image: see text] The effect of the environment on the guanine redox potential is studied by means of a theoretical–computational approach. Our data, in agreement with previous experimental findings, clearly show that the presence of consecutive guanine bases in both single- and double-stranded DNA oligomers lowers their reduction potential. Such an effect is even more marked when a G-rich quadruplex is considered, where the oxidized form of guanine is particularly stabilized. To the best of our knowledge, this is the first computational study reporting on a quantitative estimate of the dependence of the guanine redox potential on sequence and conformational effects in complex DNA molecules, ranging from single-stranded DNA to G-quadruplex. |
format | Online Article Text |
id | pubmed-9289878 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-92898782022-07-19 Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations Nardi, Alessandro Nicola Olivieri, Alessio D’Abramo, Marco J Phys Chem B [Image: see text] The effect of the environment on the guanine redox potential is studied by means of a theoretical–computational approach. Our data, in agreement with previous experimental findings, clearly show that the presence of consecutive guanine bases in both single- and double-stranded DNA oligomers lowers their reduction potential. Such an effect is even more marked when a G-rich quadruplex is considered, where the oxidized form of guanine is particularly stabilized. To the best of our knowledge, this is the first computational study reporting on a quantitative estimate of the dependence of the guanine redox potential on sequence and conformational effects in complex DNA molecules, ranging from single-stranded DNA to G-quadruplex. American Chemical Society 2022-06-07 2022-07-14 /pmc/articles/PMC9289878/ /pubmed/35671051 http://dx.doi.org/10.1021/acs.jpcb.2c02391 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Nardi, Alessandro Nicola Olivieri, Alessio D’Abramo, Marco Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations |
title | Rationalizing Sequence and Conformational Effects
on the Guanine Oxidation in Different DNA Conformations |
title_full | Rationalizing Sequence and Conformational Effects
on the Guanine Oxidation in Different DNA Conformations |
title_fullStr | Rationalizing Sequence and Conformational Effects
on the Guanine Oxidation in Different DNA Conformations |
title_full_unstemmed | Rationalizing Sequence and Conformational Effects
on the Guanine Oxidation in Different DNA Conformations |
title_short | Rationalizing Sequence and Conformational Effects
on the Guanine Oxidation in Different DNA Conformations |
title_sort | rationalizing sequence and conformational effects
on the guanine oxidation in different dna conformations |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9289878/ https://www.ncbi.nlm.nih.gov/pubmed/35671051 http://dx.doi.org/10.1021/acs.jpcb.2c02391 |
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