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Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations

[Image: see text] The effect of the environment on the guanine redox potential is studied by means of a theoretical–computational approach. Our data, in agreement with previous experimental findings, clearly show that the presence of consecutive guanine bases in both single- and double-stranded DNA...

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Autores principales: Nardi, Alessandro Nicola, Olivieri, Alessio, D’Abramo, Marco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2022
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9289878/
https://www.ncbi.nlm.nih.gov/pubmed/35671051
http://dx.doi.org/10.1021/acs.jpcb.2c02391
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author Nardi, Alessandro Nicola
Olivieri, Alessio
D’Abramo, Marco
author_facet Nardi, Alessandro Nicola
Olivieri, Alessio
D’Abramo, Marco
author_sort Nardi, Alessandro Nicola
collection PubMed
description [Image: see text] The effect of the environment on the guanine redox potential is studied by means of a theoretical–computational approach. Our data, in agreement with previous experimental findings, clearly show that the presence of consecutive guanine bases in both single- and double-stranded DNA oligomers lowers their reduction potential. Such an effect is even more marked when a G-rich quadruplex is considered, where the oxidized form of guanine is particularly stabilized. To the best of our knowledge, this is the first computational study reporting on a quantitative estimate of the dependence of the guanine redox potential on sequence and conformational effects in complex DNA molecules, ranging from single-stranded DNA to G-quadruplex.
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spelling pubmed-92898782022-07-19 Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations Nardi, Alessandro Nicola Olivieri, Alessio D’Abramo, Marco J Phys Chem B [Image: see text] The effect of the environment on the guanine redox potential is studied by means of a theoretical–computational approach. Our data, in agreement with previous experimental findings, clearly show that the presence of consecutive guanine bases in both single- and double-stranded DNA oligomers lowers their reduction potential. Such an effect is even more marked when a G-rich quadruplex is considered, where the oxidized form of guanine is particularly stabilized. To the best of our knowledge, this is the first computational study reporting on a quantitative estimate of the dependence of the guanine redox potential on sequence and conformational effects in complex DNA molecules, ranging from single-stranded DNA to G-quadruplex. American Chemical Society 2022-06-07 2022-07-14 /pmc/articles/PMC9289878/ /pubmed/35671051 http://dx.doi.org/10.1021/acs.jpcb.2c02391 Text en © 2022 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Nardi, Alessandro Nicola
Olivieri, Alessio
D’Abramo, Marco
Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations
title Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations
title_full Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations
title_fullStr Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations
title_full_unstemmed Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations
title_short Rationalizing Sequence and Conformational Effects on the Guanine Oxidation in Different DNA Conformations
title_sort rationalizing sequence and conformational effects on the guanine oxidation in different dna conformations
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9289878/
https://www.ncbi.nlm.nih.gov/pubmed/35671051
http://dx.doi.org/10.1021/acs.jpcb.2c02391
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