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Penalized regression for left‐truncated and right‐censored survival data

High‐dimensional data are becoming increasingly common in the medical field as large volumes of patient information are collected and processed by high‐throughput screening, electronic health records, and comprehensive genomic testing. Statistical models that attempt to study the effects of many pre...

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Autores principales: McGough, Sarah F., Incerti, Devin, Lyalina, Svetlana, Copping, Ryan, Narasimhan, Balasubramanian, Tibshirani, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9290657/
https://www.ncbi.nlm.nih.gov/pubmed/34302373
http://dx.doi.org/10.1002/sim.9136
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author McGough, Sarah F.
Incerti, Devin
Lyalina, Svetlana
Copping, Ryan
Narasimhan, Balasubramanian
Tibshirani, Robert
author_facet McGough, Sarah F.
Incerti, Devin
Lyalina, Svetlana
Copping, Ryan
Narasimhan, Balasubramanian
Tibshirani, Robert
author_sort McGough, Sarah F.
collection PubMed
description High‐dimensional data are becoming increasingly common in the medical field as large volumes of patient information are collected and processed by high‐throughput screening, electronic health records, and comprehensive genomic testing. Statistical models that attempt to study the effects of many predictors on survival typically implement feature selection or penalized methods to mitigate the undesirable consequences of overfitting. In some cases survival data are also left‐truncated which can give rise to an immortal time bias, but penalized survival methods that adjust for left truncation are not commonly implemented. To address these challenges, we apply a penalized Cox proportional hazards model for left‐truncated and right‐censored survival data and assess implications of left truncation adjustment on bias and interpretation. We use simulation studies and a high‐dimensional, real‐world clinico‐genomic database to highlight the pitfalls of failing to account for left truncation in survival modeling.
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spelling pubmed-92906572022-07-20 Penalized regression for left‐truncated and right‐censored survival data McGough, Sarah F. Incerti, Devin Lyalina, Svetlana Copping, Ryan Narasimhan, Balasubramanian Tibshirani, Robert Stat Med Research Articles High‐dimensional data are becoming increasingly common in the medical field as large volumes of patient information are collected and processed by high‐throughput screening, electronic health records, and comprehensive genomic testing. Statistical models that attempt to study the effects of many predictors on survival typically implement feature selection or penalized methods to mitigate the undesirable consequences of overfitting. In some cases survival data are also left‐truncated which can give rise to an immortal time bias, but penalized survival methods that adjust for left truncation are not commonly implemented. To address these challenges, we apply a penalized Cox proportional hazards model for left‐truncated and right‐censored survival data and assess implications of left truncation adjustment on bias and interpretation. We use simulation studies and a high‐dimensional, real‐world clinico‐genomic database to highlight the pitfalls of failing to account for left truncation in survival modeling. John Wiley and Sons Inc. 2021-07-24 2021-11-10 /pmc/articles/PMC9290657/ /pubmed/34302373 http://dx.doi.org/10.1002/sim.9136 Text en © 2021 Genentech Inc. Statistics in Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
McGough, Sarah F.
Incerti, Devin
Lyalina, Svetlana
Copping, Ryan
Narasimhan, Balasubramanian
Tibshirani, Robert
Penalized regression for left‐truncated and right‐censored survival data
title Penalized regression for left‐truncated and right‐censored survival data
title_full Penalized regression for left‐truncated and right‐censored survival data
title_fullStr Penalized regression for left‐truncated and right‐censored survival data
title_full_unstemmed Penalized regression for left‐truncated and right‐censored survival data
title_short Penalized regression for left‐truncated and right‐censored survival data
title_sort penalized regression for left‐truncated and right‐censored survival data
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9290657/
https://www.ncbi.nlm.nih.gov/pubmed/34302373
http://dx.doi.org/10.1002/sim.9136
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