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Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate
This analysis shows good intentions in the selection of valid and precise oxygen uptake ([Formula: see text] O(2)) measurements by retaining only slopes of declining dissolved oxygen level in a respirometer that have very high values of the coefficient of determination, r (2), are not always success...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Blackwell Publishing Ltd
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9291193/ https://www.ncbi.nlm.nih.gov/pubmed/33332581 http://dx.doi.org/10.1111/jfb.14650 |
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author | Chabot, Denis Zhang, Yangfan Farrell, Anthony P. |
author_facet | Chabot, Denis Zhang, Yangfan Farrell, Anthony P. |
author_sort | Chabot, Denis |
collection | PubMed |
description | This analysis shows good intentions in the selection of valid and precise oxygen uptake ([Formula: see text] O(2)) measurements by retaining only slopes of declining dissolved oxygen level in a respirometer that have very high values of the coefficient of determination, r (2), are not always successful at excluding nonlinear slopes. Much worse, by potentially removing linear slopes that have low r (2) only because of a low signal‐to‐noise ratio, this procedure can overestimate the calculation of standard metabolic rate (SMR) of the fish. To remedy this possibility, a few simple diagnostic tools are demonstrated to assess the appropriateness of a given minimum acceptable r (2), such as calculating the proportion of rejected [Formula: see text] O(2) determinations, producing a histogram of the r (2) values and a plot of r (2) as a function of [Formula: see text] O(2). The authors offer solutions for cases when many linear slopes have low r (2). The least satisfactory but easiest to implement is lowering the minimum acceptable r (2). More satisfactory solutions involve processing (smoothing) the raw signal of dissolved oxygen as a function of time to improve the signal‐to‐noise ratio and the r (2)s. |
format | Online Article Text |
id | pubmed-9291193 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Blackwell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-92911932022-07-20 Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate Chabot, Denis Zhang, Yangfan Farrell, Anthony P. J Fish Biol Opinion Piece This analysis shows good intentions in the selection of valid and precise oxygen uptake ([Formula: see text] O(2)) measurements by retaining only slopes of declining dissolved oxygen level in a respirometer that have very high values of the coefficient of determination, r (2), are not always successful at excluding nonlinear slopes. Much worse, by potentially removing linear slopes that have low r (2) only because of a low signal‐to‐noise ratio, this procedure can overestimate the calculation of standard metabolic rate (SMR) of the fish. To remedy this possibility, a few simple diagnostic tools are demonstrated to assess the appropriateness of a given minimum acceptable r (2), such as calculating the proportion of rejected [Formula: see text] O(2) determinations, producing a histogram of the r (2) values and a plot of r (2) as a function of [Formula: see text] O(2). The authors offer solutions for cases when many linear slopes have low r (2). The least satisfactory but easiest to implement is lowering the minimum acceptable r (2). More satisfactory solutions involve processing (smoothing) the raw signal of dissolved oxygen as a function of time to improve the signal‐to‐noise ratio and the r (2)s. Blackwell Publishing Ltd 2021-01-18 2021-05 /pmc/articles/PMC9291193/ /pubmed/33332581 http://dx.doi.org/10.1111/jfb.14650 Text en © 2020 Her Majesty the Queen in Right of Canada. Journal of Fish Biology published by John Wiley & Sons Ltd on behalf of Fisheries Society of the British Isles. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Opinion Piece Chabot, Denis Zhang, Yangfan Farrell, Anthony P. Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate |
title | Valid oxygen uptake measurements: using high r
(2) values with good intentions can bias upward the determination of standard metabolic rate |
title_full | Valid oxygen uptake measurements: using high r
(2) values with good intentions can bias upward the determination of standard metabolic rate |
title_fullStr | Valid oxygen uptake measurements: using high r
(2) values with good intentions can bias upward the determination of standard metabolic rate |
title_full_unstemmed | Valid oxygen uptake measurements: using high r
(2) values with good intentions can bias upward the determination of standard metabolic rate |
title_short | Valid oxygen uptake measurements: using high r
(2) values with good intentions can bias upward the determination of standard metabolic rate |
title_sort | valid oxygen uptake measurements: using high r
(2) values with good intentions can bias upward the determination of standard metabolic rate |
topic | Opinion Piece |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9291193/ https://www.ncbi.nlm.nih.gov/pubmed/33332581 http://dx.doi.org/10.1111/jfb.14650 |
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