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Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate

This analysis shows good intentions in the selection of valid and precise oxygen uptake ([Formula: see text] O(2)) measurements by retaining only slopes of declining dissolved oxygen level in a respirometer that have very high values of the coefficient of determination, r (2), are not always success...

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Detalles Bibliográficos
Autores principales: Chabot, Denis, Zhang, Yangfan, Farrell, Anthony P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9291193/
https://www.ncbi.nlm.nih.gov/pubmed/33332581
http://dx.doi.org/10.1111/jfb.14650
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author Chabot, Denis
Zhang, Yangfan
Farrell, Anthony P.
author_facet Chabot, Denis
Zhang, Yangfan
Farrell, Anthony P.
author_sort Chabot, Denis
collection PubMed
description This analysis shows good intentions in the selection of valid and precise oxygen uptake ([Formula: see text] O(2)) measurements by retaining only slopes of declining dissolved oxygen level in a respirometer that have very high values of the coefficient of determination, r (2), are not always successful at excluding nonlinear slopes. Much worse, by potentially removing linear slopes that have low r (2) only because of a low signal‐to‐noise ratio, this procedure can overestimate the calculation of standard metabolic rate (SMR) of the fish. To remedy this possibility, a few simple diagnostic tools are demonstrated to assess the appropriateness of a given minimum acceptable r (2), such as calculating the proportion of rejected [Formula: see text] O(2) determinations, producing a histogram of the r (2) values and a plot of r (2) as a function of [Formula: see text] O(2). The authors offer solutions for cases when many linear slopes have low r (2). The least satisfactory but easiest to implement is lowering the minimum acceptable r (2). More satisfactory solutions involve processing (smoothing) the raw signal of dissolved oxygen as a function of time to improve the signal‐to‐noise ratio and the r (2)s.
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spelling pubmed-92911932022-07-20 Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate Chabot, Denis Zhang, Yangfan Farrell, Anthony P. J Fish Biol Opinion Piece This analysis shows good intentions in the selection of valid and precise oxygen uptake ([Formula: see text] O(2)) measurements by retaining only slopes of declining dissolved oxygen level in a respirometer that have very high values of the coefficient of determination, r (2), are not always successful at excluding nonlinear slopes. Much worse, by potentially removing linear slopes that have low r (2) only because of a low signal‐to‐noise ratio, this procedure can overestimate the calculation of standard metabolic rate (SMR) of the fish. To remedy this possibility, a few simple diagnostic tools are demonstrated to assess the appropriateness of a given minimum acceptable r (2), such as calculating the proportion of rejected [Formula: see text] O(2) determinations, producing a histogram of the r (2) values and a plot of r (2) as a function of [Formula: see text] O(2). The authors offer solutions for cases when many linear slopes have low r (2). The least satisfactory but easiest to implement is lowering the minimum acceptable r (2). More satisfactory solutions involve processing (smoothing) the raw signal of dissolved oxygen as a function of time to improve the signal‐to‐noise ratio and the r (2)s. Blackwell Publishing Ltd 2021-01-18 2021-05 /pmc/articles/PMC9291193/ /pubmed/33332581 http://dx.doi.org/10.1111/jfb.14650 Text en © 2020 Her Majesty the Queen in Right of Canada. Journal of Fish Biology published by John Wiley & Sons Ltd on behalf of Fisheries Society of the British Isles. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Opinion Piece
Chabot, Denis
Zhang, Yangfan
Farrell, Anthony P.
Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate
title Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate
title_full Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate
title_fullStr Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate
title_full_unstemmed Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate
title_short Valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate
title_sort valid oxygen uptake measurements: using high r (2) values with good intentions can bias upward the determination of standard metabolic rate
topic Opinion Piece
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9291193/
https://www.ncbi.nlm.nih.gov/pubmed/33332581
http://dx.doi.org/10.1111/jfb.14650
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