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The complete chloroplast genome of Chinese endemic species Abies ferreana (Pinaceae) and its phylogenetic analysis
Abies ferreana Bordères & Gaussen 1947 is endemic to China, where it is distributed at 3300–4000 meters in the mountains of Southwest Sichuan and Northwest Yunnan. In this study, the complete chloroplast genome of A. ferreana was reconstructed by de novo assembly using whole-genome sequencing da...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9291656/ https://www.ncbi.nlm.nih.gov/pubmed/35859719 http://dx.doi.org/10.1080/23802359.2022.2097028 |
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author | Wang, Dan Zeng, Qing-Yin Han, Xue-Min |
author_facet | Wang, Dan Zeng, Qing-Yin Han, Xue-Min |
author_sort | Wang, Dan |
collection | PubMed |
description | Abies ferreana Bordères & Gaussen 1947 is endemic to China, where it is distributed at 3300–4000 meters in the mountains of Southwest Sichuan and Northwest Yunnan. In this study, the complete chloroplast genome of A. ferreana was reconstructed by de novo assembly using whole-genome sequencing data. The complete chloroplast genome of A. ferreana was 120,049 bp in length with a GC content of 37.9%. A total of 113 genes were identified, including 4 rRNA genes, 35 tRNA genes, and 74 protein-coding genes. Among these, 14 genes contain introns. In the phylogenetic tree with 12 other species of Abies, A. ferreana and Abies fanjingshanensis W. L. Huang et al. 1984 were grouped into the same branch, with a bootstrap value of 100%. The complete chloroplast genome of A. ferreana provides potential genetic resources for further Abies evolutionary and genomic studies. |
format | Online Article Text |
id | pubmed-9291656 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-92916562022-07-19 The complete chloroplast genome of Chinese endemic species Abies ferreana (Pinaceae) and its phylogenetic analysis Wang, Dan Zeng, Qing-Yin Han, Xue-Min Mitochondrial DNA B Resour Plastome Announcement Abies ferreana Bordères & Gaussen 1947 is endemic to China, where it is distributed at 3300–4000 meters in the mountains of Southwest Sichuan and Northwest Yunnan. In this study, the complete chloroplast genome of A. ferreana was reconstructed by de novo assembly using whole-genome sequencing data. The complete chloroplast genome of A. ferreana was 120,049 bp in length with a GC content of 37.9%. A total of 113 genes were identified, including 4 rRNA genes, 35 tRNA genes, and 74 protein-coding genes. Among these, 14 genes contain introns. In the phylogenetic tree with 12 other species of Abies, A. ferreana and Abies fanjingshanensis W. L. Huang et al. 1984 were grouped into the same branch, with a bootstrap value of 100%. The complete chloroplast genome of A. ferreana provides potential genetic resources for further Abies evolutionary and genomic studies. Taylor & Francis 2022-07-12 /pmc/articles/PMC9291656/ /pubmed/35859719 http://dx.doi.org/10.1080/23802359.2022.2097028 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Plastome Announcement Wang, Dan Zeng, Qing-Yin Han, Xue-Min The complete chloroplast genome of Chinese endemic species Abies ferreana (Pinaceae) and its phylogenetic analysis |
title | The complete chloroplast genome of Chinese endemic species Abies ferreana (Pinaceae) and its phylogenetic analysis |
title_full | The complete chloroplast genome of Chinese endemic species Abies ferreana (Pinaceae) and its phylogenetic analysis |
title_fullStr | The complete chloroplast genome of Chinese endemic species Abies ferreana (Pinaceae) and its phylogenetic analysis |
title_full_unstemmed | The complete chloroplast genome of Chinese endemic species Abies ferreana (Pinaceae) and its phylogenetic analysis |
title_short | The complete chloroplast genome of Chinese endemic species Abies ferreana (Pinaceae) and its phylogenetic analysis |
title_sort | complete chloroplast genome of chinese endemic species abies ferreana (pinaceae) and its phylogenetic analysis |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9291656/ https://www.ncbi.nlm.nih.gov/pubmed/35859719 http://dx.doi.org/10.1080/23802359.2022.2097028 |
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