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The geodiv r package: Tools for calculating gradient surface metrics

1. The geodiv r package calculates gradient surface metrics from imagery and other gridded datasets to provide continuous measures of landscape heterogeneity for landscape pattern analysis. 2. geodiv is the first open‐source, command line toolbox for calculating many gradient surface metrics and eas...

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Autores principales: Smith, Annie C., Dahlin, Kyla M., Record, Sydne, Costanza, Jennifer K., Wilson, Adam M., Zarnetske, Phoebe L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9292368/
https://www.ncbi.nlm.nih.gov/pubmed/35874973
http://dx.doi.org/10.1111/2041-210X.13677
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author Smith, Annie C.
Dahlin, Kyla M.
Record, Sydne
Costanza, Jennifer K.
Wilson, Adam M.
Zarnetske, Phoebe L.
author_facet Smith, Annie C.
Dahlin, Kyla M.
Record, Sydne
Costanza, Jennifer K.
Wilson, Adam M.
Zarnetske, Phoebe L.
author_sort Smith, Annie C.
collection PubMed
description 1. The geodiv r package calculates gradient surface metrics from imagery and other gridded datasets to provide continuous measures of landscape heterogeneity for landscape pattern analysis. 2. geodiv is the first open‐source, command line toolbox for calculating many gradient surface metrics and easily integrates parallel computing for applications with large images or rasters (e.g. remotely sensed data). All functions may be applied either globally to derive a single metric for an entire image or locally to create a texture image over moving windows of a user‐defined extent. 3. We present a comprehensive description of the functions available through geodiv. A supplemental vignette provides an example application of geodiv to the fields of landscape ecology and biogeography. 4. geodiv allows users to easily retrieve estimates of spatial heterogeneity for a variety of purposes, enhancing our understanding of how environmental structure influences ecosystem processes. The package works with any continuous imagery and may be widely applied in many fields where estimates of surface complexity are useful.
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spelling pubmed-92923682022-07-20 The geodiv r package: Tools for calculating gradient surface metrics Smith, Annie C. Dahlin, Kyla M. Record, Sydne Costanza, Jennifer K. Wilson, Adam M. Zarnetske, Phoebe L. Methods Ecol Evol Applications 1. The geodiv r package calculates gradient surface metrics from imagery and other gridded datasets to provide continuous measures of landscape heterogeneity for landscape pattern analysis. 2. geodiv is the first open‐source, command line toolbox for calculating many gradient surface metrics and easily integrates parallel computing for applications with large images or rasters (e.g. remotely sensed data). All functions may be applied either globally to derive a single metric for an entire image or locally to create a texture image over moving windows of a user‐defined extent. 3. We present a comprehensive description of the functions available through geodiv. A supplemental vignette provides an example application of geodiv to the fields of landscape ecology and biogeography. 4. geodiv allows users to easily retrieve estimates of spatial heterogeneity for a variety of purposes, enhancing our understanding of how environmental structure influences ecosystem processes. The package works with any continuous imagery and may be widely applied in many fields where estimates of surface complexity are useful. John Wiley and Sons Inc. 2021-08-02 2021-11 /pmc/articles/PMC9292368/ /pubmed/35874973 http://dx.doi.org/10.1111/2041-210X.13677 Text en © 2021 The Authors. Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Applications
Smith, Annie C.
Dahlin, Kyla M.
Record, Sydne
Costanza, Jennifer K.
Wilson, Adam M.
Zarnetske, Phoebe L.
The geodiv r package: Tools for calculating gradient surface metrics
title The geodiv r package: Tools for calculating gradient surface metrics
title_full The geodiv r package: Tools for calculating gradient surface metrics
title_fullStr The geodiv r package: Tools for calculating gradient surface metrics
title_full_unstemmed The geodiv r package: Tools for calculating gradient surface metrics
title_short The geodiv r package: Tools for calculating gradient surface metrics
title_sort geodiv r package: tools for calculating gradient surface metrics
topic Applications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9292368/
https://www.ncbi.nlm.nih.gov/pubmed/35874973
http://dx.doi.org/10.1111/2041-210X.13677
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