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Molecular Recognition of Natural and Non‐Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy

β‐1→4‐Glucan polysaccharides like cellulose, derivatives and analogues, are attracting attention due to their unique physicochemical properties, as ideal candidates for many different applications in biotechnology. Access to these polysaccharides with a high level of purity at scale is still challen...

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Autores principales: Gabrielli, Valeria, Muñoz‐García, Juan C., Pergolizzi, Giulia, de Andrade, Peterson, Khimyak, Yaroslav Z., Field, Robert A., Angulo, Jesús
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9293210/
https://www.ncbi.nlm.nih.gov/pubmed/34436794
http://dx.doi.org/10.1002/chem.202102039
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author Gabrielli, Valeria
Muñoz‐García, Juan C.
Pergolizzi, Giulia
de Andrade, Peterson
Khimyak, Yaroslav Z.
Field, Robert A.
Angulo, Jesús
author_facet Gabrielli, Valeria
Muñoz‐García, Juan C.
Pergolizzi, Giulia
de Andrade, Peterson
Khimyak, Yaroslav Z.
Field, Robert A.
Angulo, Jesús
author_sort Gabrielli, Valeria
collection PubMed
description β‐1→4‐Glucan polysaccharides like cellulose, derivatives and analogues, are attracting attention due to their unique physicochemical properties, as ideal candidates for many different applications in biotechnology. Access to these polysaccharides with a high level of purity at scale is still challenging, and eco‐friendly alternatives by using enzymes in vitro are highly desirable. One prominent candidate enzyme is cellodextrin phosphorylase (CDP) from Ruminiclostridium thermocellum, which is able to yield cellulose oligomers from short cellodextrins and α‐d‐glucose 1‐phosphate (Glc‐1‐P) as substrates. Remarkably, its broad specificity towards donors and acceptors allows the generation of highly diverse cellulose‐based structures to produce novel materials. However, to fully exploit this CDP broad specificity, a detailed understanding of the molecular recognition of substrates by this enzyme in solution is needed. Herein, we provide a detailed investigation of the molecular recognition of ligands by CDP in solution by saturation transfer difference (STD) NMR spectroscopy, tr‐NOESY and protein‐ligand docking. Our results, discussed in the context of previous reaction kinetics data in the literature, allow a better understanding of the structural basis of the broad binding specificity of this biotechnologically relevant enzyme.
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spelling pubmed-92932102022-07-20 Molecular Recognition of Natural and Non‐Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy Gabrielli, Valeria Muñoz‐García, Juan C. Pergolizzi, Giulia de Andrade, Peterson Khimyak, Yaroslav Z. Field, Robert A. Angulo, Jesús Chemistry Full Papers β‐1→4‐Glucan polysaccharides like cellulose, derivatives and analogues, are attracting attention due to their unique physicochemical properties, as ideal candidates for many different applications in biotechnology. Access to these polysaccharides with a high level of purity at scale is still challenging, and eco‐friendly alternatives by using enzymes in vitro are highly desirable. One prominent candidate enzyme is cellodextrin phosphorylase (CDP) from Ruminiclostridium thermocellum, which is able to yield cellulose oligomers from short cellodextrins and α‐d‐glucose 1‐phosphate (Glc‐1‐P) as substrates. Remarkably, its broad specificity towards donors and acceptors allows the generation of highly diverse cellulose‐based structures to produce novel materials. However, to fully exploit this CDP broad specificity, a detailed understanding of the molecular recognition of substrates by this enzyme in solution is needed. Herein, we provide a detailed investigation of the molecular recognition of ligands by CDP in solution by saturation transfer difference (STD) NMR spectroscopy, tr‐NOESY and protein‐ligand docking. Our results, discussed in the context of previous reaction kinetics data in the literature, allow a better understanding of the structural basis of the broad binding specificity of this biotechnologically relevant enzyme. John Wiley and Sons Inc. 2021-10-08 2021-11-11 /pmc/articles/PMC9293210/ /pubmed/34436794 http://dx.doi.org/10.1002/chem.202102039 Text en © 2021 The Authors. Chemistry - A European Journal published by Wiley-VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Full Papers
Gabrielli, Valeria
Muñoz‐García, Juan C.
Pergolizzi, Giulia
de Andrade, Peterson
Khimyak, Yaroslav Z.
Field, Robert A.
Angulo, Jesús
Molecular Recognition of Natural and Non‐Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy
title Molecular Recognition of Natural and Non‐Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy
title_full Molecular Recognition of Natural and Non‐Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy
title_fullStr Molecular Recognition of Natural and Non‐Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy
title_full_unstemmed Molecular Recognition of Natural and Non‐Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy
title_short Molecular Recognition of Natural and Non‐Natural Substrates by Cellodextrin Phosphorylase from Ruminiclostridium Thermocellum Investigated by NMR Spectroscopy
title_sort molecular recognition of natural and non‐natural substrates by cellodextrin phosphorylase from ruminiclostridium thermocellum investigated by nmr spectroscopy
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9293210/
https://www.ncbi.nlm.nih.gov/pubmed/34436794
http://dx.doi.org/10.1002/chem.202102039
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