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TiM-Net: Transformer in M-Net for Retinal Vessel Segmentation

retinal image is a crucial window for the clinical observation of cardiovascular, cerebrovascular, or other correlated diseases. Retinal vessel segmentation is of great benefit to the clinical diagnosis. Recently, the convolutional neural network (CNN) has become a dominant method in the retinal ves...

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Autores principales: Zhang, Hongbin, Zhong, Xiang, Li, Zhijie, Chen, Yanan, Zhu, Zhiliang, Lv, Jingqin, Li, Chuanxiu, Zhou, Ying, Li, Guangli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9293566/
https://www.ncbi.nlm.nih.gov/pubmed/35859930
http://dx.doi.org/10.1155/2022/9016401
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author Zhang, Hongbin
Zhong, Xiang
Li, Zhijie
Chen, Yanan
Zhu, Zhiliang
Lv, Jingqin
Li, Chuanxiu
Zhou, Ying
Li, Guangli
author_facet Zhang, Hongbin
Zhong, Xiang
Li, Zhijie
Chen, Yanan
Zhu, Zhiliang
Lv, Jingqin
Li, Chuanxiu
Zhou, Ying
Li, Guangli
author_sort Zhang, Hongbin
collection PubMed
description retinal image is a crucial window for the clinical observation of cardiovascular, cerebrovascular, or other correlated diseases. Retinal vessel segmentation is of great benefit to the clinical diagnosis. Recently, the convolutional neural network (CNN) has become a dominant method in the retinal vessel segmentation field, especially the U-shaped CNN models. However, the conventional encoder in CNN is vulnerable to noisy interference, and the long-rang relationship in fundus images has not been fully utilized. In this paper, we propose a novel model called Transformer in M-Net (TiM-Net) based on M-Net, diverse attention mechanisms, and weighted side output layers to efficaciously perform retinal vessel segmentation. First, to alleviate the effects of noise, a dual-attention mechanism based on channel and spatial is designed. Then the self-attention mechanism in Transformer is introduced into skip connection to re-encode features and model the long-range relationship explicitly. Finally, a weighted SideOut layer is proposed for better utilization of the features from each side layer. Extensive experiments are conducted on three public data sets to show the effectiveness and robustness of our TiM-Net compared with the state-of-the-art baselines. Both quantitative and qualitative results prove its clinical practicality. Moreover, variants of TiM-Net also achieve competitive performance, demonstrating its scalability and generalization ability. The code of our model is available at https://github.com/ZX-ECJTU/TiM-Net.
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spelling pubmed-92935662022-07-19 TiM-Net: Transformer in M-Net for Retinal Vessel Segmentation Zhang, Hongbin Zhong, Xiang Li, Zhijie Chen, Yanan Zhu, Zhiliang Lv, Jingqin Li, Chuanxiu Zhou, Ying Li, Guangli J Healthc Eng Research Article retinal image is a crucial window for the clinical observation of cardiovascular, cerebrovascular, or other correlated diseases. Retinal vessel segmentation is of great benefit to the clinical diagnosis. Recently, the convolutional neural network (CNN) has become a dominant method in the retinal vessel segmentation field, especially the U-shaped CNN models. However, the conventional encoder in CNN is vulnerable to noisy interference, and the long-rang relationship in fundus images has not been fully utilized. In this paper, we propose a novel model called Transformer in M-Net (TiM-Net) based on M-Net, diverse attention mechanisms, and weighted side output layers to efficaciously perform retinal vessel segmentation. First, to alleviate the effects of noise, a dual-attention mechanism based on channel and spatial is designed. Then the self-attention mechanism in Transformer is introduced into skip connection to re-encode features and model the long-range relationship explicitly. Finally, a weighted SideOut layer is proposed for better utilization of the features from each side layer. Extensive experiments are conducted on three public data sets to show the effectiveness and robustness of our TiM-Net compared with the state-of-the-art baselines. Both quantitative and qualitative results prove its clinical practicality. Moreover, variants of TiM-Net also achieve competitive performance, demonstrating its scalability and generalization ability. The code of our model is available at https://github.com/ZX-ECJTU/TiM-Net. Hindawi 2022-07-11 /pmc/articles/PMC9293566/ /pubmed/35859930 http://dx.doi.org/10.1155/2022/9016401 Text en Copyright © 2022 Hongbin Zhang et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Zhang, Hongbin
Zhong, Xiang
Li, Zhijie
Chen, Yanan
Zhu, Zhiliang
Lv, Jingqin
Li, Chuanxiu
Zhou, Ying
Li, Guangli
TiM-Net: Transformer in M-Net for Retinal Vessel Segmentation
title TiM-Net: Transformer in M-Net for Retinal Vessel Segmentation
title_full TiM-Net: Transformer in M-Net for Retinal Vessel Segmentation
title_fullStr TiM-Net: Transformer in M-Net for Retinal Vessel Segmentation
title_full_unstemmed TiM-Net: Transformer in M-Net for Retinal Vessel Segmentation
title_short TiM-Net: Transformer in M-Net for Retinal Vessel Segmentation
title_sort tim-net: transformer in m-net for retinal vessel segmentation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9293566/
https://www.ncbi.nlm.nih.gov/pubmed/35859930
http://dx.doi.org/10.1155/2022/9016401
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