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Automated Quantification of Human Osteoclasts Using Object Detection
A balanced skeletal remodeling process is paramount to staying healthy. The remodeling process can be studied by analyzing osteoclasts differentiated in vitro from mononuclear cells isolated from peripheral blood or from buffy coats. Osteoclasts are highly specialized, multinucleated cells that brea...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9294346/ https://www.ncbi.nlm.nih.gov/pubmed/35865628 http://dx.doi.org/10.3389/fcell.2022.941542 |
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author | Kohtala, Sampsa Nedal, Tonje Marie Vikene Kriesi, Carlo Moen, Siv Helen Ma, Qianli Ødegaard, Kristin Sirnes Standal, Therese Steinert, Martin |
author_facet | Kohtala, Sampsa Nedal, Tonje Marie Vikene Kriesi, Carlo Moen, Siv Helen Ma, Qianli Ødegaard, Kristin Sirnes Standal, Therese Steinert, Martin |
author_sort | Kohtala, Sampsa |
collection | PubMed |
description | A balanced skeletal remodeling process is paramount to staying healthy. The remodeling process can be studied by analyzing osteoclasts differentiated in vitro from mononuclear cells isolated from peripheral blood or from buffy coats. Osteoclasts are highly specialized, multinucleated cells that break down bone tissue. Identifying and correctly quantifying osteoclasts in culture are usually done by trained personnel using light microscopy, which is time-consuming and susceptible to operator biases. Using machine learning with 307 different well images from seven human PBMC donors containing a total of 94,974 marked osteoclasts, we present an efficient and reliable method to quantify human osteoclasts from microscopic images. An open-source, deep learning-based object detection framework called Darknet (YOLOv4) was used to train and test several models to analyze the applicability and generalizability of the proposed method. The trained model achieved a mean average precision of 85.26% with a correlation coefficient of 0.99 with human annotators on an independent test set and counted on average 2.1% more osteoclasts per culture than the humans. Additionally, the trained models agreed more than two independent human annotators, supporting a more reliable and less biased approach to quantifying osteoclasts while saving time and resources. We invite interested researchers to test their datasets on our models to further strengthen and validate the results. |
format | Online Article Text |
id | pubmed-9294346 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92943462022-07-20 Automated Quantification of Human Osteoclasts Using Object Detection Kohtala, Sampsa Nedal, Tonje Marie Vikene Kriesi, Carlo Moen, Siv Helen Ma, Qianli Ødegaard, Kristin Sirnes Standal, Therese Steinert, Martin Front Cell Dev Biol Cell and Developmental Biology A balanced skeletal remodeling process is paramount to staying healthy. The remodeling process can be studied by analyzing osteoclasts differentiated in vitro from mononuclear cells isolated from peripheral blood or from buffy coats. Osteoclasts are highly specialized, multinucleated cells that break down bone tissue. Identifying and correctly quantifying osteoclasts in culture are usually done by trained personnel using light microscopy, which is time-consuming and susceptible to operator biases. Using machine learning with 307 different well images from seven human PBMC donors containing a total of 94,974 marked osteoclasts, we present an efficient and reliable method to quantify human osteoclasts from microscopic images. An open-source, deep learning-based object detection framework called Darknet (YOLOv4) was used to train and test several models to analyze the applicability and generalizability of the proposed method. The trained model achieved a mean average precision of 85.26% with a correlation coefficient of 0.99 with human annotators on an independent test set and counted on average 2.1% more osteoclasts per culture than the humans. Additionally, the trained models agreed more than two independent human annotators, supporting a more reliable and less biased approach to quantifying osteoclasts while saving time and resources. We invite interested researchers to test their datasets on our models to further strengthen and validate the results. Frontiers Media S.A. 2022-07-05 /pmc/articles/PMC9294346/ /pubmed/35865628 http://dx.doi.org/10.3389/fcell.2022.941542 Text en Copyright © 2022 Kohtala, Nedal, Kriesi, Moen, Ma, Ødegaard, Standal and Steinert. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Cell and Developmental Biology Kohtala, Sampsa Nedal, Tonje Marie Vikene Kriesi, Carlo Moen, Siv Helen Ma, Qianli Ødegaard, Kristin Sirnes Standal, Therese Steinert, Martin Automated Quantification of Human Osteoclasts Using Object Detection |
title | Automated Quantification of Human Osteoclasts Using Object Detection |
title_full | Automated Quantification of Human Osteoclasts Using Object Detection |
title_fullStr | Automated Quantification of Human Osteoclasts Using Object Detection |
title_full_unstemmed | Automated Quantification of Human Osteoclasts Using Object Detection |
title_short | Automated Quantification of Human Osteoclasts Using Object Detection |
title_sort | automated quantification of human osteoclasts using object detection |
topic | Cell and Developmental Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9294346/ https://www.ncbi.nlm.nih.gov/pubmed/35865628 http://dx.doi.org/10.3389/fcell.2022.941542 |
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