Cargando…

BETA: a comprehensive benchmark for computational drug–target prediction

Internal validation is the most popular evaluation strategy used for drug–target predictive models. The simple random shuffling in the cross-validation, however, is not always ideal to handle large, diverse and copious datasets as it could potentially introduce bias. Hence, these predictive models c...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zong, Nansu, Li, Ning, Wen, Andrew, Ngo, Victoria, Yu, Yue, Huang, Ming, Chowdhury, Shaika, Jiang, Chao, Fu, Sunyang, Weinshilboum, Richard, Jiang, Guoqian, Hunter, Lawrence, Liu, Hongfang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2022
Materias:	Case Study
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9294420/ https://www.ncbi.nlm.nih.gov/pubmed/35649342 http://dx.doi.org/10.1093/bib/bbac199

Ejemplares similares

Deep Denoising of Raw Biomedical Knowledge Graph From COVID-19 Literature, LitCovid, and Pubtator: Framework Development and Validation
por: Jiang, Chao, et al.
Publicado: (2022)

Predicting Physiological Response in Heart Failure Management: A Graph Representation Learning Approach using Electronic Health Records
por: Chowdhury, Shaika, et al.
Publicado: (2023)

Developing an FHIR-Based Computational Pipeline for Automatic Population of Case Report Forms for Colorectal Cancer Clinical Trials Using Electronic Health Records
por: Zong, Nansu, et al.
Publicado: (2020)

The Implication of Latent Information Quality to the Reproducibility of Secondary Use of Electronic Health Records
por: Fu, Sunyang, et al.
Publicado: (2022)

Computational drug repurposing based on electronic health records: a scoping review
por: Zong, Nansu, et al.
Publicado: (2022)

Leveraging Genetic Reports and Electronic Health Records for the Prediction of Primary Cancers: Algorithm Development and Validation Study
por: Zong, Nansu, et al.
Publicado: (2021)

Detecting and Filtering Immune-Related Adverse Events Signal Based on Text Mining and Observational Health Data Sciences and Informatics Common Data Model: Framework Development Study
por: Yu, Yue, et al.
Publicado: (2020)

Recommended practices and ethical considerations for natural language processing‐assisted observational research: A scoping review
por: Fu, Sunyang, et al.
Publicado: (2022)

Artificial Intelligence-based Efficacy Prediction of Phase 3 Clinical Trial for Repurposing Heart Failure Therapies
por: Zong, Nansu, et al.
Publicado: (2023)

FHIR-Ontop-OMOP: Building clinical knowledge graphs in FHIR RDF with the OMOP Common data Model
por: Xiao, Guohui, et al.
Publicado: (2022)

A Comprehensive Benchmark of Transcriptomic Biomarkers for Immune Checkpoint Blockades
por: Kang, Hongen, et al.
Publicado: (2023)

Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration
por: Yu, Yue, et al.
Publicado: (2022)

PO2RDF: representation of real-world data for precision oncology using resource description framework
por: Zhao, Yiqing, et al.
Publicado: (2022)

Benchmarking computers for HEP
por: McIntosh, E
Publicado: (1993)

Benchmark scenarios for low $\tan \beta$ in the MSSM
por: Bagnaschi, Emanuele, et al.
Publicado: (2015)

Standardizing adverse drug event reporting data
por: Wang, Liwei, et al.
Publicado: (2014)

Constructing co-occurrence network embeddings to assist association extraction for COVID-19 and other coronavirus infectious diseases
por: Oniani, David, et al.
Publicado: (2020)

The 2019 n2c2/OHNLP Track on Clinical Semantic Textual Similarity: Overview
por: Wang, Yanshan, et al.
Publicado: (2020)

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
por: Ou, Shujun, et al.
Publicado: (2019)

Impact of Diverse Data Sources on Computational Phenotyping
por: Wang, Liwei, et al.
Publicado: (2020)

Assessing document section heterogeneity across multiple electronic health record systems for computational phenotyping: A case study of heart-failure phenotyping algorithm
por: Moon, Sungrim, et al.
Publicado: (2023)

Quantum Computing Simulation Benchmarks
por: Gonzalez Castillo, Samuel
Publicado: (2021)

Preliminary exploration of survival analysis using the OHDSI common data model: a case study of intrahepatic cholangiocarcinoma
por: Hong, Na, et al.
Publicado: (2018)

Characterizing Chronic Pain Episodes in Clinical Text at Two Health Care Systems: Comprehensive Annotation and Corpus Analysis
por: Carlson, Luke A, et al.
Publicado: (2020)

Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
por: McIntyre, Alexa B. R., et al.
Publicado: (2017)

A comprehensive Benchmark for fake news detection
por: Galli, Antonio, et al.
Publicado: (2022)

ADEpedia 2.0: Integration of Normalized Adverse Drug Events (ADEs) Knowledge from the UMLS
por: Jiang, Guoqian, et al.
Publicado: ( 201)

Mining severe drug-drug interaction adverse events using Semantic Web technologies: a case study
por: Jiang, Guoqian, et al.
Publicado: (2015)

NeuroSim Simulator for Compute-in-Memory Hardware Accelerator: Validation and Benchmark
por: Lu, Anni, et al.
Publicado: (2021)

Family History Extraction From Synthetic Clinical Narratives Using Natural Language Processing: Overview and Evaluation of a Challenge Data Set and Solutions for the 2019 National NLP Clinical Challenges (n2c2)/Open Health Natural Language Processing (OHNLP) Competition
por: Shen, Feichen, et al.
Publicado: (2021)

Bacon: a comprehensive computational benchmarking framework for evaluating targeted chromatin conformation capture-specific methodologies
por: Tang, Li, et al.
Publicado: (2022)

Author Correction: Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
por: Ou, Shujun, et al.
Publicado: (2022)

Academic library computer technology benchmarks
por: Primary Research Group
Publicado: (2011)

Improved benchmarks for computational motif discovery
por: Sandve, Geir Kjetil, et al.
Publicado: (2007)

Public library computer technology benchmarks
por: Primary Research Group
Publicado: (2011)

Systematic benchmarking of omics computational tools
por: Mangul, Serghei, et al.
Publicado: (2019)

Essential guidelines for computational method benchmarking
por: Weber, Lukas M., et al.
Publicado: (2019)

Benchmarking an 11-qubit quantum computer
por: Wright, K., et al.
Publicado: (2019)

Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers
por: McIntyre, Alexa B. R., et al.
Publicado: (2019)

Comprehensively benchmarking applications for detecting copy number variation
por: Zhang, Le, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_bv84hsbppbsm90cvhusjnqc215