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Pediococcus pentosaceus IMI 507025 genome sequencing data
The genome sequence data for the pickled cucumbers isolate, Pediococcus pentosaceus IMI 507025, is reported. The raw reads and analysed genome reads were deposited at NCBI under Bioproject with the accession number PRJNA814992. The number of contigs before and after trimming were 17 and 12 contigs,...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9294475/ https://www.ncbi.nlm.nih.gov/pubmed/35864877 http://dx.doi.org/10.1016/j.dib.2022.108446 |
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author | Nikodinoska, Ivana Makkonen, Jenny Blande, Daniel Moran, Colm |
author_facet | Nikodinoska, Ivana Makkonen, Jenny Blande, Daniel Moran, Colm |
author_sort | Nikodinoska, Ivana |
collection | PubMed |
description | The genome sequence data for the pickled cucumbers isolate, Pediococcus pentosaceus IMI 507025, is reported. The raw reads and analysed genome reads were deposited at NCBI under Bioproject with the accession number PRJNA814992. The number of contigs before and after trimming were 17 and 12 contigs, respectively. The total size of the genome was 1,795,439 bp containing 1,811 total genes, of which 1,751 were coding sequences. IMI 507025 identity was determined via average nucleotide identity (ANI), obtaining an identity value of 99.5994% between IMI 507025 and the type strain P. pentosaceus ATCC 33316, identifying the strain as P. pentosaceus. Screening for the antimicrobial resistance (AMR) and virulence genes in the genome of IMI 507025 showed no hits, confirming the safety of the tested strain. Presence of plasmids was not found. |
format | Online Article Text |
id | pubmed-9294475 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-92944752022-07-20 Pediococcus pentosaceus IMI 507025 genome sequencing data Nikodinoska, Ivana Makkonen, Jenny Blande, Daniel Moran, Colm Data Brief Data Article The genome sequence data for the pickled cucumbers isolate, Pediococcus pentosaceus IMI 507025, is reported. The raw reads and analysed genome reads were deposited at NCBI under Bioproject with the accession number PRJNA814992. The number of contigs before and after trimming were 17 and 12 contigs, respectively. The total size of the genome was 1,795,439 bp containing 1,811 total genes, of which 1,751 were coding sequences. IMI 507025 identity was determined via average nucleotide identity (ANI), obtaining an identity value of 99.5994% between IMI 507025 and the type strain P. pentosaceus ATCC 33316, identifying the strain as P. pentosaceus. Screening for the antimicrobial resistance (AMR) and virulence genes in the genome of IMI 507025 showed no hits, confirming the safety of the tested strain. Presence of plasmids was not found. Elsevier 2022-07-08 /pmc/articles/PMC9294475/ /pubmed/35864877 http://dx.doi.org/10.1016/j.dib.2022.108446 Text en © 2022 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Nikodinoska, Ivana Makkonen, Jenny Blande, Daniel Moran, Colm Pediococcus pentosaceus IMI 507025 genome sequencing data |
title | Pediococcus pentosaceus IMI 507025 genome sequencing data |
title_full | Pediococcus pentosaceus IMI 507025 genome sequencing data |
title_fullStr | Pediococcus pentosaceus IMI 507025 genome sequencing data |
title_full_unstemmed | Pediococcus pentosaceus IMI 507025 genome sequencing data |
title_short | Pediococcus pentosaceus IMI 507025 genome sequencing data |
title_sort | pediococcus pentosaceus imi 507025 genome sequencing data |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9294475/ https://www.ncbi.nlm.nih.gov/pubmed/35864877 http://dx.doi.org/10.1016/j.dib.2022.108446 |
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