Cargando…

Pediococcus pentosaceus IMI 507025 genome sequencing data

The genome sequence data for the pickled cucumbers isolate, Pediococcus pentosaceus IMI 507025, is reported. The raw reads and analysed genome reads were deposited at NCBI under Bioproject with the accession number PRJNA814992. The number of contigs before and after trimming were 17 and 12 contigs,...

Descripción completa

Detalles Bibliográficos
Autores principales: Nikodinoska, Ivana, Makkonen, Jenny, Blande, Daniel, Moran, Colm
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9294475/
https://www.ncbi.nlm.nih.gov/pubmed/35864877
http://dx.doi.org/10.1016/j.dib.2022.108446
_version_ 1784749862732955648
author Nikodinoska, Ivana
Makkonen, Jenny
Blande, Daniel
Moran, Colm
author_facet Nikodinoska, Ivana
Makkonen, Jenny
Blande, Daniel
Moran, Colm
author_sort Nikodinoska, Ivana
collection PubMed
description The genome sequence data for the pickled cucumbers isolate, Pediococcus pentosaceus IMI 507025, is reported. The raw reads and analysed genome reads were deposited at NCBI under Bioproject with the accession number PRJNA814992. The number of contigs before and after trimming were 17 and 12 contigs, respectively. The total size of the genome was 1,795,439 bp containing 1,811 total genes, of which 1,751 were coding sequences. IMI 507025 identity was determined via average nucleotide identity (ANI), obtaining an identity value of 99.5994% between IMI 507025 and the type strain P. pentosaceus ATCC 33316, identifying the strain as P. pentosaceus. Screening for the antimicrobial resistance (AMR) and virulence genes in the genome of IMI 507025 showed no hits, confirming the safety of the tested strain. Presence of plasmids was not found.
format Online
Article
Text
id pubmed-9294475
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-92944752022-07-20 Pediococcus pentosaceus IMI 507025 genome sequencing data Nikodinoska, Ivana Makkonen, Jenny Blande, Daniel Moran, Colm Data Brief Data Article The genome sequence data for the pickled cucumbers isolate, Pediococcus pentosaceus IMI 507025, is reported. The raw reads and analysed genome reads were deposited at NCBI under Bioproject with the accession number PRJNA814992. The number of contigs before and after trimming were 17 and 12 contigs, respectively. The total size of the genome was 1,795,439 bp containing 1,811 total genes, of which 1,751 were coding sequences. IMI 507025 identity was determined via average nucleotide identity (ANI), obtaining an identity value of 99.5994% between IMI 507025 and the type strain P. pentosaceus ATCC 33316, identifying the strain as P. pentosaceus. Screening for the antimicrobial resistance (AMR) and virulence genes in the genome of IMI 507025 showed no hits, confirming the safety of the tested strain. Presence of plasmids was not found. Elsevier 2022-07-08 /pmc/articles/PMC9294475/ /pubmed/35864877 http://dx.doi.org/10.1016/j.dib.2022.108446 Text en © 2022 The Authors. Published by Elsevier Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Nikodinoska, Ivana
Makkonen, Jenny
Blande, Daniel
Moran, Colm
Pediococcus pentosaceus IMI 507025 genome sequencing data
title Pediococcus pentosaceus IMI 507025 genome sequencing data
title_full Pediococcus pentosaceus IMI 507025 genome sequencing data
title_fullStr Pediococcus pentosaceus IMI 507025 genome sequencing data
title_full_unstemmed Pediococcus pentosaceus IMI 507025 genome sequencing data
title_short Pediococcus pentosaceus IMI 507025 genome sequencing data
title_sort pediococcus pentosaceus imi 507025 genome sequencing data
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9294475/
https://www.ncbi.nlm.nih.gov/pubmed/35864877
http://dx.doi.org/10.1016/j.dib.2022.108446
work_keys_str_mv AT nikodinoskaivana pediococcuspentosaceusimi507025genomesequencingdata
AT makkonenjenny pediococcuspentosaceusimi507025genomesequencingdata
AT blandedaniel pediococcuspentosaceusimi507025genomesequencingdata
AT morancolm pediococcuspentosaceusimi507025genomesequencingdata