Mitochondrial genome assembly and phylogenetic analysis of Upeneus japonicus (Houttuyn, 1782) from the East China Sea

The mitochondrial genome of Upeneus japonicus was successfully assembled by high-throughput sequencing data in this study. This is the first report on the complete mitochondrial genome of U. japonicus, with a total length of 16,535 bp, including 13 protein-coding genes (PCGs), two ribosomal RNA gene...

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Detalles Bibliográficos
Autores principales: Wang, Li, Wang, Shouqiang, Lin, Ye, Liu, Shenghao, Liang, Panjiao, Zhao, Linlin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9295816/
https://www.ncbi.nlm.nih.gov/pubmed/35866142
http://dx.doi.org/10.1080/23802359.2022.2095939
Descripción
Sumario:The mitochondrial genome of Upeneus japonicus was successfully assembled by high-throughput sequencing data in this study. This is the first report on the complete mitochondrial genome of U. japonicus, with a total length of 16,535 bp, including 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and a control region (D-loop). The overall base composition is 26.05% A, 26.10% T, 29.14% C, and 18.71% G. Phylogenetic analysis showed that U. japonicus was grouped with its sister species U. tragula. The mitochondrial complete genome study of U. japonicus would lay the foundation for further studies in population genetics and evolutionary analysis.

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