Mitochondrial genome assembly and phylogenetic analysis of Upeneus japonicus (Houttuyn, 1782) from the East China Sea

The mitochondrial genome of Upeneus japonicus was successfully assembled by high-throughput sequencing data in this study. This is the first report on the complete mitochondrial genome of U. japonicus, with a total length of 16,535 bp, including 13 protein-coding genes (PCGs), two ribosomal RNA gene...

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Autores principales: Wang, Li, Wang, Shouqiang, Lin, Ye, Liu, Shenghao, Liang, Panjiao, Zhao, Linlin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2022
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9295816/
https://www.ncbi.nlm.nih.gov/pubmed/35866142
http://dx.doi.org/10.1080/23802359.2022.2095939
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author Wang, Li
Wang, Shouqiang
Lin, Ye
Liu, Shenghao
Liang, Panjiao
Zhao, Linlin
author_facet Wang, Li
Wang, Shouqiang
Lin, Ye
Liu, Shenghao
Liang, Panjiao
Zhao, Linlin
author_sort Wang, Li
collection PubMed
description The mitochondrial genome of Upeneus japonicus was successfully assembled by high-throughput sequencing data in this study. This is the first report on the complete mitochondrial genome of U. japonicus, with a total length of 16,535 bp, including 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and a control region (D-loop). The overall base composition is 26.05% A, 26.10% T, 29.14% C, and 18.71% G. Phylogenetic analysis showed that U. japonicus was grouped with its sister species U. tragula. The mitochondrial complete genome study of U. japonicus would lay the foundation for further studies in population genetics and evolutionary analysis.
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spelling pubmed-92958162022-07-20 Mitochondrial genome assembly and phylogenetic analysis of Upeneus japonicus (Houttuyn, 1782) from the East China Sea Wang, Li Wang, Shouqiang Lin, Ye Liu, Shenghao Liang, Panjiao Zhao, Linlin Mitochondrial DNA B Resour Mitogenome Announcement The mitochondrial genome of Upeneus japonicus was successfully assembled by high-throughput sequencing data in this study. This is the first report on the complete mitochondrial genome of U. japonicus, with a total length of 16,535 bp, including 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and a control region (D-loop). The overall base composition is 26.05% A, 26.10% T, 29.14% C, and 18.71% G. Phylogenetic analysis showed that U. japonicus was grouped with its sister species U. tragula. The mitochondrial complete genome study of U. japonicus would lay the foundation for further studies in population genetics and evolutionary analysis. Taylor & Francis 2022-07-18 /pmc/articles/PMC9295816/ /pubmed/35866142 http://dx.doi.org/10.1080/23802359.2022.2095939 Text en © 2022 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Wang, Li
Wang, Shouqiang
Lin, Ye
Liu, Shenghao
Liang, Panjiao
Zhao, Linlin
Mitochondrial genome assembly and phylogenetic analysis of Upeneus japonicus (Houttuyn, 1782) from the East China Sea
title Mitochondrial genome assembly and phylogenetic analysis of Upeneus japonicus (Houttuyn, 1782) from the East China Sea
title_full Mitochondrial genome assembly and phylogenetic analysis of Upeneus japonicus (Houttuyn, 1782) from the East China Sea
title_fullStr Mitochondrial genome assembly and phylogenetic analysis of Upeneus japonicus (Houttuyn, 1782) from the East China Sea
title_full_unstemmed Mitochondrial genome assembly and phylogenetic analysis of Upeneus japonicus (Houttuyn, 1782) from the East China Sea
title_short Mitochondrial genome assembly and phylogenetic analysis of Upeneus japonicus (Houttuyn, 1782) from the East China Sea
title_sort mitochondrial genome assembly and phylogenetic analysis of upeneus japonicus (houttuyn, 1782) from the east china sea
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9295816/
https://www.ncbi.nlm.nih.gov/pubmed/35866142
http://dx.doi.org/10.1080/23802359.2022.2095939
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