Cargando…

Enrichment of centromeric DNA from human cells

Centromeres are key elements for chromosome segregation. Canonical centromeres are built over long-stretches of tandem repetitive arrays. Despite being quite abundant compared to other loci, centromere sequences overall still represent only 2 to 5% of the human genome, therefore studying their genet...

Descripción completa

Detalles Bibliográficos
Autores principales:	Gamba, Riccardo, Mazzucco, Giulia, Wilhelm, Therese, Velikovsky, Leonid, Salinas-Luypaert, Catalina, Chardon, Florian, Picotto, Julien, Bohec, Mylène, Baulande, Sylvain, Doksani, Ylli, Fachinetti, Daniele
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2022
Materias:	Methods
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9295943/ https://www.ncbi.nlm.nih.gov/pubmed/35853083 http://dx.doi.org/10.1371/journal.pgen.1010306

Ejemplares similares

Gene replacement strategies validate the use of functional tags on centromeric chromatin and invalidate an essential role for CENP-A(K124ub)
por: Salinas-Luypaert, Catalina, et al.
Publicado: (2021)

A genetic memory initiates the epigenetic loop necessary to preserve centromere position
por: Hoffmann, Sebastian, et al.
Publicado: (2020)

The Response to DNA Damage at Telomeric Repeats and Its Consequences for Telomere Function
por: Doksani, Ylli
Publicado: (2019)

The dark side of centromeres: types, causes and consequences of structural abnormalities implicating centromeric DNA
por: Barra, V., et al.
Publicado: (2018)

Kronos scRT: a uniform framework for single-cell replication timing analysis
por: Gnan, Stefano, et al.
Publicado: (2022)

Telomere damage induces internal loops that generate telomeric circles
por: Mazzucco, Giulia, et al.
Publicado: (2020)

Automated annotation of human centromeres with HORmon
por: Kunyavskaya, Olga, et al.
Publicado: (2022)

The telomerase reverse transcriptase elongates reversed replication forks at telomeric repeats
por: Huda, Armela, et al.
Publicado: (2023)

Rapid molecular assays to study human centromere genomics
por: Contreras-Galindo, Rafael, et al.
Publicado: (2017)

Keeping the Centromere under Control: A Promising Role for DNA Methylation
por: Scelfo, Andrea, et al.
Publicado: (2019)

HiCAT: a tool for automatic annotation of centromere structure
por: Gao, Shenghan, et al.
Publicado: (2023)

Centromere reference models for human chromosomes X and Y satellite arrays
por: Miga, Karen H., et al.
Publicado: (2014)

Targeted next-generation sequencing identifies clinically relevant somatic mutations in a large cohort of inflammatory breast cancer
por: Liang, Xu, et al.
Publicado: (2018)

α-amino trimethylation of CENP-A by NRMT is required for full recruitment of the centromere
por: Sathyan, Kizhakke M., et al.
Publicado: (2017)

Human in vivo-generated monocyte-derived dendritic cells and macrophages cross-present antigens through a vacuolar pathway
por: Tang-Huau, Tsing-Lee, et al.
Publicado: (2018)

The COMPASS subunit Spp1 protects nascent DNA at the Tus/Ter replication fork barrier by limiting DNA availability to nucleases
por: Ghaddar, Nagham, et al.
Publicado: (2023)

simplifyEnrichment: A Bioconductor Package for Clustering and Visualizing Functional Enrichment Results
por: Gu, Zuguang, et al.
Publicado: (2023)

Non-B-Form DNA Is Enriched at Centromeres
por: Kasinathan, Sivakanthan, et al.
Publicado: (2018)

First report of in vitro selection of RNA aptamers targeted to recombinant Loxosceles laeta spider toxins
por: Sapag, Amalia, et al.
Publicado: (2014)

Enriching for direct regulatory targets in perturbed gene-expression profiles
por: Tringe, Susannah G, et al.
Publicado: (2004)

Enrichment of sequencing targets from the human genome by solution hybridization
por: Tewhey, Ryan, et al.
Publicado: (2009)

Selective enrichment of damaged DNA molecules for ancient genome sequencing
por: Gansauge, Marie-Theres, et al.
Publicado: (2014)

Phosphorylation of CENP-A on serine 7 does not control centromere function
por: Barra, Viviana, et al.
Publicado: (2019)

Enrichment of Non-B-Form DNA at D. melanogaster Centromeres
por: Patchigolla, Venkata S.P., et al.
Publicado: (2022)

Estimating enrichment of repetitive elements from high-throughput sequence data
por: Day, Daniel S, et al.
Publicado: (2010)

Systematic elucidation and in vivo validation of sequences enriched in hindbrain transcriptional control
por: Burzynski, Grzegorz M., et al.
Publicado: (2012)

Identification of pathogenic variant enriched regions across genes and gene families
por: Pérez-Palma, Eduardo, et al.
Publicado: (2020)

Finding associations in a heterogeneous setting: statistical test for aberration enrichment
por: Mezlini, Aziz M., et al.
Publicado: (2021)

Gene set enrichment analysis for genome-wide DNA methylation data
por: Maksimovic, Jovana, et al.
Publicado: (2021)

MBE: model-based enrichment estimation and prediction for differential sequencing data
por: Busia, Akosua, et al.
Publicado: (2023)

Absolute enrichment: gene set enrichment analysis for homeostatic systems
por: Saxena, Vishal, et al.
Publicado: (2006)

The major horse satellite DNA family is associated with centromere competence
por: Cerutti, Federico, et al.
Publicado: (2016)

MSEA: detection and quantification of mutation hotspots through mutation set enrichment analysis
por: Jia, Peilin, et al.
Publicado: (2014)

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis
por: Utturkar, Sagar M., et al.
Publicado: (2016)

Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples
por: Martin, Samuel, et al.
Publicado: (2022)

Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases
por: Louadi, Zakaria, et al.
Publicado: (2021)

Novel (13)C enrichment technique reveals early turnover of DHA in peripheral tissues
por: Klievik, Brinley J., et al.
Publicado: (2023)

Genome enrichment of rare and unknown species from complicated microbiomes by nanopore selective sequencing
por: Sun, Yuhong, et al.
Publicado: (2023)

SHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing data
por: Poulsen, Line Dahl, et al.
Publicado: (2015)

Phenylboronic acid-functionalized magnetic nanoparticles for one-step saccharides enrichment and mass spectrometry analysis
por: Xue, Xiangdong, et al.
Publicado: (2015)

Cannot write session to /tmp/vufind_sessions/sess_u3o0g5g6ejnh2tdhv2k4ac7qo7