Cargando…
External validation of a machine learning classifier to identify unhealthy alcohol use in hospitalized patients
BACKGROUND AND AIMS: Unhealthy alcohol use (UAU) is one of the leading causes of global morbidity. A machine learning approach to alcohol screening could accelerate best practices when integrated into electronic health record (EHR) systems. This study aimed to validate externally a natural language...
Autores principales: | , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9296269/ https://www.ncbi.nlm.nih.gov/pubmed/34729829 http://dx.doi.org/10.1111/add.15730 |
_version_ | 1784750234908229632 |
---|---|
author | Lin, Yiqi Sharma, Brihat Thompson, Hale M. Boley, Randy Perticone, Kathryn Chhabra, Neeraj Afshar, Majid Karnik, Niranjan S. |
author_facet | Lin, Yiqi Sharma, Brihat Thompson, Hale M. Boley, Randy Perticone, Kathryn Chhabra, Neeraj Afshar, Majid Karnik, Niranjan S. |
author_sort | Lin, Yiqi |
collection | PubMed |
description | BACKGROUND AND AIMS: Unhealthy alcohol use (UAU) is one of the leading causes of global morbidity. A machine learning approach to alcohol screening could accelerate best practices when integrated into electronic health record (EHR) systems. This study aimed to validate externally a natural language processing (NLP) classifier developed at an independent medical center. DESIGN: Retrospective cohort study. SETTING: The site for validation was a midwestern United States tertiary‐care, urban medical center that has an inpatient structured universal screening model for unhealthy substance use and an active addiction consult service. PARTICIPANTS/CASES: Unplanned admissions of adult patients between October 23, 2017 and December 31, 2019, with EHR documentation of manual alcohol screening were included in the cohort (n = 57 605). MEASUREMENTS: The Alcohol Use Disorders Identification Test (AUDIT) served as the reference standard. AUDIT scores ≥5 for females and ≥8 for males served as cases for UAU. To examine error in manual screening or under‐reporting, a post hoc error analysis was conducted, reviewing discordance between the NLP classifier and AUDIT‐derived reference. All clinical notes excluding the manual screening and AUDIT documentation from the EHR were included in the NLP analysis. FINDINGS: Using clinical notes from the first 24 hours of each encounter, the NLP classifier demonstrated an area under the receiver operating characteristic curve (AUCROC) and precision‐recall area under the curve (PRAUC) of 0.91 (95% CI = 0.89–0.92) and 0.56 (95% CI = 0.53–0.60), respectively. At the optimal cut point of 0.5, sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) were 0.66 (95% CI = 0.62–0.69), 0.98 (95% CI = 0.98–0.98), 0.35 (95% CI = 0.33–0.38), and 1.0 (95% CI = 1.0–1.0), respectively. CONCLUSIONS: External validation of a publicly available alcohol misuse classifier demonstrates adequate sensitivity and specificity for routine clinical use as an automated screening tool for identifying at‐risk patients. |
format | Online Article Text |
id | pubmed-9296269 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92962692022-07-19 External validation of a machine learning classifier to identify unhealthy alcohol use in hospitalized patients Lin, Yiqi Sharma, Brihat Thompson, Hale M. Boley, Randy Perticone, Kathryn Chhabra, Neeraj Afshar, Majid Karnik, Niranjan S. Addiction Research Reports BACKGROUND AND AIMS: Unhealthy alcohol use (UAU) is one of the leading causes of global morbidity. A machine learning approach to alcohol screening could accelerate best practices when integrated into electronic health record (EHR) systems. This study aimed to validate externally a natural language processing (NLP) classifier developed at an independent medical center. DESIGN: Retrospective cohort study. SETTING: The site for validation was a midwestern United States tertiary‐care, urban medical center that has an inpatient structured universal screening model for unhealthy substance use and an active addiction consult service. PARTICIPANTS/CASES: Unplanned admissions of adult patients between October 23, 2017 and December 31, 2019, with EHR documentation of manual alcohol screening were included in the cohort (n = 57 605). MEASUREMENTS: The Alcohol Use Disorders Identification Test (AUDIT) served as the reference standard. AUDIT scores ≥5 for females and ≥8 for males served as cases for UAU. To examine error in manual screening or under‐reporting, a post hoc error analysis was conducted, reviewing discordance between the NLP classifier and AUDIT‐derived reference. All clinical notes excluding the manual screening and AUDIT documentation from the EHR were included in the NLP analysis. FINDINGS: Using clinical notes from the first 24 hours of each encounter, the NLP classifier demonstrated an area under the receiver operating characteristic curve (AUCROC) and precision‐recall area under the curve (PRAUC) of 0.91 (95% CI = 0.89–0.92) and 0.56 (95% CI = 0.53–0.60), respectively. At the optimal cut point of 0.5, sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV) were 0.66 (95% CI = 0.62–0.69), 0.98 (95% CI = 0.98–0.98), 0.35 (95% CI = 0.33–0.38), and 1.0 (95% CI = 1.0–1.0), respectively. CONCLUSIONS: External validation of a publicly available alcohol misuse classifier demonstrates adequate sensitivity and specificity for routine clinical use as an automated screening tool for identifying at‐risk patients. John Wiley and Sons Inc. 2021-11-23 2022-04 /pmc/articles/PMC9296269/ /pubmed/34729829 http://dx.doi.org/10.1111/add.15730 Text en © 2021 The Authors. Addiction published by John Wiley & Sons Ltd on behalf of Society for the Study of Addiction. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Reports Lin, Yiqi Sharma, Brihat Thompson, Hale M. Boley, Randy Perticone, Kathryn Chhabra, Neeraj Afshar, Majid Karnik, Niranjan S. External validation of a machine learning classifier to identify unhealthy alcohol use in hospitalized patients |
title | External validation of a machine learning classifier to identify unhealthy alcohol use in hospitalized patients |
title_full | External validation of a machine learning classifier to identify unhealthy alcohol use in hospitalized patients |
title_fullStr | External validation of a machine learning classifier to identify unhealthy alcohol use in hospitalized patients |
title_full_unstemmed | External validation of a machine learning classifier to identify unhealthy alcohol use in hospitalized patients |
title_short | External validation of a machine learning classifier to identify unhealthy alcohol use in hospitalized patients |
title_sort | external validation of a machine learning classifier to identify unhealthy alcohol use in hospitalized patients |
topic | Research Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9296269/ https://www.ncbi.nlm.nih.gov/pubmed/34729829 http://dx.doi.org/10.1111/add.15730 |
work_keys_str_mv | AT linyiqi externalvalidationofamachinelearningclassifiertoidentifyunhealthyalcoholuseinhospitalizedpatients AT sharmabrihat externalvalidationofamachinelearningclassifiertoidentifyunhealthyalcoholuseinhospitalizedpatients AT thompsonhalem externalvalidationofamachinelearningclassifiertoidentifyunhealthyalcoholuseinhospitalizedpatients AT boleyrandy externalvalidationofamachinelearningclassifiertoidentifyunhealthyalcoholuseinhospitalizedpatients AT perticonekathryn externalvalidationofamachinelearningclassifiertoidentifyunhealthyalcoholuseinhospitalizedpatients AT chhabraneeraj externalvalidationofamachinelearningclassifiertoidentifyunhealthyalcoholuseinhospitalizedpatients AT afsharmajid externalvalidationofamachinelearningclassifiertoidentifyunhealthyalcoholuseinhospitalizedpatients AT karnikniranjans externalvalidationofamachinelearningclassifiertoidentifyunhealthyalcoholuseinhospitalizedpatients |