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Serum RNA biomarkers for predicting survival in non-human primates following thoracic radiation

In a mass radiation exposure, the healthcare system may rely on differential expression of miRNA to determine exposure and effectively allocate resources. To this end, miRNome analysis was performed on non-human primate serum after whole thorax photon beam irradiation of 9.8 or 10.7 Gy with dose rat...

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Autores principales: May, Jared M., Shankavaram, Uma, Bylicky, Michelle A., Chopra, Sunita, Scott, Kevin, Martello, Shannon, Thrall, Karla, Axtelle, Jim, Menon, Naresh, Coleman, C. Norman, Aryankalayil, Molykutty J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9296457/
https://www.ncbi.nlm.nih.gov/pubmed/35853961
http://dx.doi.org/10.1038/s41598-022-16316-x
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author May, Jared M.
Shankavaram, Uma
Bylicky, Michelle A.
Chopra, Sunita
Scott, Kevin
Martello, Shannon
Thrall, Karla
Axtelle, Jim
Menon, Naresh
Coleman, C. Norman
Aryankalayil, Molykutty J.
author_facet May, Jared M.
Shankavaram, Uma
Bylicky, Michelle A.
Chopra, Sunita
Scott, Kevin
Martello, Shannon
Thrall, Karla
Axtelle, Jim
Menon, Naresh
Coleman, C. Norman
Aryankalayil, Molykutty J.
author_sort May, Jared M.
collection PubMed
description In a mass radiation exposure, the healthcare system may rely on differential expression of miRNA to determine exposure and effectively allocate resources. To this end, miRNome analysis was performed on non-human primate serum after whole thorax photon beam irradiation of 9.8 or 10.7 Gy with dose rate 600 cGy/min. Serum was collected up to 270 days after irradiation and sequenced to determine immediate and delayed effects on miRNA expression. Elastic net based GLM methods were used to develop models that predicted the dose vs. controls at 81% accuracy at Day 15. A three-group model at Day 9 achieved 71% accuracy in determining if an animal would die in less than 90 days, between 90 and 269 days, or survive the length of the study. At Day 21, we achieved 100% accuracy in determining whether an animal would later develop pleural effusion. These results demonstrate the potential ability of miRNAs to determine thorax partial-body irradiation dose and forecast survival or complications early following whole thorax irradiation in large animal models. Future experiments incorporating additional doses and independent animal cohorts are warranted to validate these results. Development of a serum miRNA assay will facilitate the administration of medical countermeasures to increase survival and limit normal tissue damage following a mass exposure.
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spelling pubmed-92964572022-07-21 Serum RNA biomarkers for predicting survival in non-human primates following thoracic radiation May, Jared M. Shankavaram, Uma Bylicky, Michelle A. Chopra, Sunita Scott, Kevin Martello, Shannon Thrall, Karla Axtelle, Jim Menon, Naresh Coleman, C. Norman Aryankalayil, Molykutty J. Sci Rep Article In a mass radiation exposure, the healthcare system may rely on differential expression of miRNA to determine exposure and effectively allocate resources. To this end, miRNome analysis was performed on non-human primate serum after whole thorax photon beam irradiation of 9.8 or 10.7 Gy with dose rate 600 cGy/min. Serum was collected up to 270 days after irradiation and sequenced to determine immediate and delayed effects on miRNA expression. Elastic net based GLM methods were used to develop models that predicted the dose vs. controls at 81% accuracy at Day 15. A three-group model at Day 9 achieved 71% accuracy in determining if an animal would die in less than 90 days, between 90 and 269 days, or survive the length of the study. At Day 21, we achieved 100% accuracy in determining whether an animal would later develop pleural effusion. These results demonstrate the potential ability of miRNAs to determine thorax partial-body irradiation dose and forecast survival or complications early following whole thorax irradiation in large animal models. Future experiments incorporating additional doses and independent animal cohorts are warranted to validate these results. Development of a serum miRNA assay will facilitate the administration of medical countermeasures to increase survival and limit normal tissue damage following a mass exposure. Nature Publishing Group UK 2022-07-19 /pmc/articles/PMC9296457/ /pubmed/35853961 http://dx.doi.org/10.1038/s41598-022-16316-x Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
May, Jared M.
Shankavaram, Uma
Bylicky, Michelle A.
Chopra, Sunita
Scott, Kevin
Martello, Shannon
Thrall, Karla
Axtelle, Jim
Menon, Naresh
Coleman, C. Norman
Aryankalayil, Molykutty J.
Serum RNA biomarkers for predicting survival in non-human primates following thoracic radiation
title Serum RNA biomarkers for predicting survival in non-human primates following thoracic radiation
title_full Serum RNA biomarkers for predicting survival in non-human primates following thoracic radiation
title_fullStr Serum RNA biomarkers for predicting survival in non-human primates following thoracic radiation
title_full_unstemmed Serum RNA biomarkers for predicting survival in non-human primates following thoracic radiation
title_short Serum RNA biomarkers for predicting survival in non-human primates following thoracic radiation
title_sort serum rna biomarkers for predicting survival in non-human primates following thoracic radiation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9296457/
https://www.ncbi.nlm.nih.gov/pubmed/35853961
http://dx.doi.org/10.1038/s41598-022-16316-x
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