Cargando…

Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

Whole genome sequencing of SARS-CoV-2 has occurred at an unprecedented scale, and can be exploited for characterising outbreak risks at the fine-scale needed to inform control strategies. One setting at continued risk of COVID-19 outbreaks are higher education institutions, associated with student m...

Descripción completa

Detalles Bibliográficos
Autores principales:	Nickbakhsh, Sema, Hughes, Joseph, Christofidis, Nicolaos, Griffiths, Emily, Shaaban, Sharif, Enright, Jessica, Smollett, Katherine, Nomikou, Kyriaki, Palmalux, Natasha, Tong, Lily, Carmichael, Stephen, Sreenu, Vattipally B., Orton, Richard, Goldstein, Emily J., Tomb, Rachael M., Templeton, Kate, Gunson, Rory N., da Silva Filipe, Ana, Milosevic, Catriona, Thomson, Emma, Robertson, David L., Holden, Matthew T. G., Illingworth, Christopher J. R., Smith-Palmer, Alison
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9296497/ https://www.ncbi.nlm.nih.gov/pubmed/35853960 http://dx.doi.org/10.1038/s41598-022-15661-1

Ejemplares similares

Epidemiology of Seasonal Coronaviruses: Establishing the Context for the Emergence of Coronavirus Disease 2019
por: Nickbakhsh, Sema, et al.
Publicado: (2020)

Estimation of temporal covariances in pathogen dynamics using Bayesian multivariate autoregressive models
por: Mair, Colette, et al.
Publicado: (2019)

Retrospective screening for SARS-CoV-2 in Greater Glasgow and Clyde ICUs between December 2019 and February 2020
por: Tomb, Rachael M., et al.
Publicado: (2020)

Author Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland
por: da Silva Filipe, Ana, et al.
Publicado: (2021)

Publisher Correction: Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland
por: da Silva Filipe, Ana, et al.
Publicado: (2021)

Prevalence of mixed genotype hepatitis C virus infections in the UK as determined by genotype‐specific PCR and deep sequencing
por: McNaughton, A. L., et al.
Publicado: (2018)

Virus–virus interactions impact the population dynamics of influenza and the common cold
por: Nickbakhsh, Sema, et al.
Publicado: (2019)

Microsatellite polymorphism across the M. tuberculosis and M. bovis genomes: Implications on genome evolution and plasticity
por: Sreenu, Vattipally B, et al.
Publicado: (2006)

Metagenomic next-generation sequencing aids the diagnosis of viral infections in febrile returning travellers
por: Jerome, Hanna, et al.
Publicado: (2019)

Genetic epidemiology of SARS-CoV-2 transmission in renal dialysis units – A high risk community-hospital interface
por: Li, Kathy K., et al.
Publicado: (2021)

Increased risk of HIV and other drug-related harms associated with injecting in public places: national bio-behavioural survey of people who inject drugs
por: Trayner, Kirsten M.A., et al.
Publicado: (2020)

Assessing the Potential Interactions between Cellular miRNA and Arboviral Genomic RNA in the Yellow Fever Mosquito, Aedes aegypti
por: Yen, Pei-Shi, et al.
Publicado: (2019)

SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway
por: Willett, Brian J., et al.
Publicado: (2022)

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway
por: Willett, Brian J., et al.
Publicado: (2022)

Unusual, stable replicating viruses generated from mumps virus cDNA clones
por: Bamford, Connor, et al.
Publicado: (2019)

Genetic characterization of human coxsackievirus A6 variants associated with atypical hand, foot and mouth disease: a potential role of recombination in emergence and pathogenicity
por: Gaunt, Eleanor, et al.
Publicado: (2015)

Seoul Virus Associated with Pet Rats, Scotland, UK, 2019
por: Shepherd, James G., et al.
Publicado: (2021)

Mixed Genotype Hepatitis C Infections and Implications for Treatment
por: McNaughton, Anna L, et al.
Publicado: (2014)

Direct Nanopore Sequencing of Human Cytomegalovirus Genomes from High-Viral-Load Clinical Samples
por: Li, Kathy K., et al.
Publicado: (2023)

Spindle-E Acts Antivirally Against Alphaviruses in Mosquito Cells
por: Varjak, Margus, et al.
Publicado: (2018)

The Transmission Route and Selection Pressure in HCV Subtype 3a and 3b Chinese Infections: Evolutionary Kinetics and Selective Force Analysis
por: Xu, Ru, et al.
Publicado: (2022)

Antiviral RNAi Response in Culex quinquefasciatus-Derived HSU Cells
por: Altinli, Mine, et al.
Publicado: (2023)

Generating social network data using partially described networks: an example informing avian influenza control in the British poultry industry
por: Nickbakhsh, Sema, et al.
Publicado: (2011)

The development of a multiplex real-time RT-PCR for the detection of adenovirus, astrovirus, rotavirus and sapovirus from stool samples
por: Bennett, Susan, et al.
Publicado: (2017)

Bluetongue virus spread in Europe is a consequence of climatic, landscape and vertebrate host factors as revealed by phylogeographic inference
por: Jacquot, Maude, et al.
Publicado: (2017)

Characterization of the Zika virus induced small RNA response in Aedes aegypti cells
por: Varjak, Margus, et al.
Publicado: (2017)

Antiviral RNA Interference Activity in Cells of the Predatory Mosquito, Toxorhynchites amboinensis
por: Donald, Claire L., et al.
Publicado: (2018)

Analysis of Paramyxovirus Transcription and Replication by High-Throughput Sequencing
por: Wignall-Fleming, Elizabeth B., et al.
Publicado: (2019)

During the summer 2009 outbreak of "swine flu" in Scotland what respiratory pathogens were diagnosed as H1N1/2009?
por: Gunson, Rory N, et al.
Publicado: (2011)

The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis
por: Pascall, David J., et al.
Publicado: (2023)

Agua Salud Alphavirus Infection, Dissemination and Transmission in Aedes aegypti Mosquitoes
por: Jagtap, Swati V., et al.
Publicado: (2023)

The apparent interferon resistance of transmitted HIV-1 is possibly a consequence of enhanced replicative fitness
por: Sugrue, Elena, et al.
Publicado: (2022)

Reply to Kloepfer and Gern: Independent studies suggest an arms race between influenza and rhinovirus: What next?
por: Nickbakhsh, S., et al.
Publicado: (2020)

Severe Acute Respiratory Syndrome Coronavirus 2 Serosurveillance in a Patient Population Reveals Differences in Virus Exposure and Antibody-Mediated Immunity According to Host Demography and Healthcare Setting
por: Hughes, Ellen C, et al.
Publicado: (2020)

Directions of change in intrinsic case severity across successive SARS-CoV-2 variant waves have been inconsistent
por: Pascall, David J., et al.
Publicado: (2023)

The development of a multiplex real-time PCR for the detection of herpes simplex virus 1 and 2, varizella zoster virus, adenovirus and Chlamydia trachomatis from eye swabs
por: Bennett, Susan, et al.
Publicado: (2013)

Deep analysis of cellular transcriptomes – LongSAGE versus classic MPSS
por: Hene, Lawrence, et al.
Publicado: (2007)

Integrating patient and whole-genome sequencing data to provide insights into the epidemiology of seasonal influenza A(H3N2) viruses
por: Goldstein, Emily J., et al.
Publicado: (2017)

Diversity of Transmission Outcomes Following Co-Infection of Sheep with Strains of Bluetongue Virus Serotype 1 and 8
por: Veronesi, Eva, et al.
Publicado: (2020)

Implications of within-farm transmission for network dynamics: Consequences for the spread of avian influenza
por: Nickbakhsh, Sema, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_cd30o9ohhf5knd4qi3mkmmoldt