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The relevance of pedigrees in the conservation genomics era

Over the past 50 years conservation genetics has developed a substantive toolbox to inform species management. One of the most long‐standing tools available to manage genetics—the pedigree—has been widely used to characterize diversity and maximize evolutionary potential in threatened populations. N...

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Autores principales: Galla, Stephanie J., Brown, Liz, Couch‐Lewis (Ngāi Tahu: Te Hapū o Ngāti Wheke, Ngāti Waewae), Yvette, Cubrinovska, Ilina, Eason, Daryl, Gooley, Rebecca M., Hamilton, Jill A., Heath, Julie A., Hauser, Samantha S., Latch, Emily K., Matocq, Marjorie D., Richardson, Anne, Wold, Jana R., Hogg, Carolyn J., Santure, Anna W., Steeves, Tammy E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9298073/
https://www.ncbi.nlm.nih.gov/pubmed/34553796
http://dx.doi.org/10.1111/mec.16192
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author Galla, Stephanie J.
Brown, Liz
Couch‐Lewis (Ngāi Tahu: Te Hapū o Ngāti Wheke, Ngāti Waewae), Yvette
Cubrinovska, Ilina
Eason, Daryl
Gooley, Rebecca M.
Hamilton, Jill A.
Heath, Julie A.
Hauser, Samantha S.
Latch, Emily K.
Matocq, Marjorie D.
Richardson, Anne
Wold, Jana R.
Hogg, Carolyn J.
Santure, Anna W.
Steeves, Tammy E.
author_facet Galla, Stephanie J.
Brown, Liz
Couch‐Lewis (Ngāi Tahu: Te Hapū o Ngāti Wheke, Ngāti Waewae), Yvette
Cubrinovska, Ilina
Eason, Daryl
Gooley, Rebecca M.
Hamilton, Jill A.
Heath, Julie A.
Hauser, Samantha S.
Latch, Emily K.
Matocq, Marjorie D.
Richardson, Anne
Wold, Jana R.
Hogg, Carolyn J.
Santure, Anna W.
Steeves, Tammy E.
author_sort Galla, Stephanie J.
collection PubMed
description Over the past 50 years conservation genetics has developed a substantive toolbox to inform species management. One of the most long‐standing tools available to manage genetics—the pedigree—has been widely used to characterize diversity and maximize evolutionary potential in threatened populations. Now, with the ability to use high throughput sequencing to estimate relatedness, inbreeding, and genome‐wide functional diversity, some have asked whether it is warranted for conservation biologists to continue collecting and collating pedigrees for species management. In this perspective, we argue that pedigrees remain a relevant tool, and when combined with genomic data, create an invaluable resource for conservation genomic management. Genomic data can address pedigree pitfalls (e.g., founder relatedness, missing data, uncertainty), and in return robust pedigrees allow for more nuanced research design, including well‐informed sampling strategies and quantitative analyses (e.g., heritability, linkage) to better inform genomic inquiry. We further contend that building and maintaining pedigrees provides an opportunity to strengthen trusted relationships among conservation researchers, practitioners, Indigenous Peoples, and Local Communities.
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spelling pubmed-92980732022-07-21 The relevance of pedigrees in the conservation genomics era Galla, Stephanie J. Brown, Liz Couch‐Lewis (Ngāi Tahu: Te Hapū o Ngāti Wheke, Ngāti Waewae), Yvette Cubrinovska, Ilina Eason, Daryl Gooley, Rebecca M. Hamilton, Jill A. Heath, Julie A. Hauser, Samantha S. Latch, Emily K. Matocq, Marjorie D. Richardson, Anne Wold, Jana R. Hogg, Carolyn J. Santure, Anna W. Steeves, Tammy E. Mol Ecol News and Views Over the past 50 years conservation genetics has developed a substantive toolbox to inform species management. One of the most long‐standing tools available to manage genetics—the pedigree—has been widely used to characterize diversity and maximize evolutionary potential in threatened populations. Now, with the ability to use high throughput sequencing to estimate relatedness, inbreeding, and genome‐wide functional diversity, some have asked whether it is warranted for conservation biologists to continue collecting and collating pedigrees for species management. In this perspective, we argue that pedigrees remain a relevant tool, and when combined with genomic data, create an invaluable resource for conservation genomic management. Genomic data can address pedigree pitfalls (e.g., founder relatedness, missing data, uncertainty), and in return robust pedigrees allow for more nuanced research design, including well‐informed sampling strategies and quantitative analyses (e.g., heritability, linkage) to better inform genomic inquiry. We further contend that building and maintaining pedigrees provides an opportunity to strengthen trusted relationships among conservation researchers, practitioners, Indigenous Peoples, and Local Communities. John Wiley and Sons Inc. 2021-10-22 2022-01 /pmc/articles/PMC9298073/ /pubmed/34553796 http://dx.doi.org/10.1111/mec.16192 Text en © 2021 The Authors. Molecular Ecology published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle News and Views
Galla, Stephanie J.
Brown, Liz
Couch‐Lewis (Ngāi Tahu: Te Hapū o Ngāti Wheke, Ngāti Waewae), Yvette
Cubrinovska, Ilina
Eason, Daryl
Gooley, Rebecca M.
Hamilton, Jill A.
Heath, Julie A.
Hauser, Samantha S.
Latch, Emily K.
Matocq, Marjorie D.
Richardson, Anne
Wold, Jana R.
Hogg, Carolyn J.
Santure, Anna W.
Steeves, Tammy E.
The relevance of pedigrees in the conservation genomics era
title The relevance of pedigrees in the conservation genomics era
title_full The relevance of pedigrees in the conservation genomics era
title_fullStr The relevance of pedigrees in the conservation genomics era
title_full_unstemmed The relevance of pedigrees in the conservation genomics era
title_short The relevance of pedigrees in the conservation genomics era
title_sort relevance of pedigrees in the conservation genomics era
topic News and Views
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9298073/
https://www.ncbi.nlm.nih.gov/pubmed/34553796
http://dx.doi.org/10.1111/mec.16192
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