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CIEGAN: A Deep Learning Tool for Cell Image Enhancement

Long-term live-cell imaging technology has emerged in the study of cell culture and development, and it is expected to elucidate the differentiation or reprogramming morphology of cells and the dynamic process of interaction between cells. There are some advantages to this technique: it is noninvasi...

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Autores principales: Sun, Qiushi, Yang, Xiaochun, Guo, Jingtao, Zhao, Yang, Liu, Yi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9298179/
https://www.ncbi.nlm.nih.gov/pubmed/35873483
http://dx.doi.org/10.3389/fgene.2022.913372
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author Sun, Qiushi
Yang, Xiaochun
Guo, Jingtao
Zhao, Yang
Liu, Yi
author_facet Sun, Qiushi
Yang, Xiaochun
Guo, Jingtao
Zhao, Yang
Liu, Yi
author_sort Sun, Qiushi
collection PubMed
description Long-term live-cell imaging technology has emerged in the study of cell culture and development, and it is expected to elucidate the differentiation or reprogramming morphology of cells and the dynamic process of interaction between cells. There are some advantages to this technique: it is noninvasive, high-throughput, low-cost, and it can help researchers explore phenomena that are otherwise difficult to observe. Many challenges arise in the real-time process, for example, low-quality micrographs are often obtained due to unavoidable human factors or technical factors in the long-term experimental period. Moreover, some core dynamics in the developmental process are rare and fleeting in imaging observation and difficult to recapture again. Therefore, this study proposes a deep learning method for microscope cell image enhancement to reconstruct sharp images. We combine generative adversarial nets and various loss functions to make blurry images sharp again, which is much more convenient for researchers to carry out further analysis. This technology can not only make up the blurry images of critical moments of the development process through image enhancement but also allows long-term live-cell imaging to find a balance between imaging speed and image quality. Furthermore, the scalability of this technology makes the methods perform well in fluorescence image enhancement. Finally, the method is tested in long-term live-cell imaging of human-induced pluripotent stem cell-derived cardiomyocyte differentiation experiments, and it can greatly improve the image space resolution ratio.
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spelling pubmed-92981792022-07-21 CIEGAN: A Deep Learning Tool for Cell Image Enhancement Sun, Qiushi Yang, Xiaochun Guo, Jingtao Zhao, Yang Liu, Yi Front Genet Genetics Long-term live-cell imaging technology has emerged in the study of cell culture and development, and it is expected to elucidate the differentiation or reprogramming morphology of cells and the dynamic process of interaction between cells. There are some advantages to this technique: it is noninvasive, high-throughput, low-cost, and it can help researchers explore phenomena that are otherwise difficult to observe. Many challenges arise in the real-time process, for example, low-quality micrographs are often obtained due to unavoidable human factors or technical factors in the long-term experimental period. Moreover, some core dynamics in the developmental process are rare and fleeting in imaging observation and difficult to recapture again. Therefore, this study proposes a deep learning method for microscope cell image enhancement to reconstruct sharp images. We combine generative adversarial nets and various loss functions to make blurry images sharp again, which is much more convenient for researchers to carry out further analysis. This technology can not only make up the blurry images of critical moments of the development process through image enhancement but also allows long-term live-cell imaging to find a balance between imaging speed and image quality. Furthermore, the scalability of this technology makes the methods perform well in fluorescence image enhancement. Finally, the method is tested in long-term live-cell imaging of human-induced pluripotent stem cell-derived cardiomyocyte differentiation experiments, and it can greatly improve the image space resolution ratio. Frontiers Media S.A. 2022-07-04 /pmc/articles/PMC9298179/ /pubmed/35873483 http://dx.doi.org/10.3389/fgene.2022.913372 Text en Copyright © 2022 Sun, Yang, Guo, Zhao and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Sun, Qiushi
Yang, Xiaochun
Guo, Jingtao
Zhao, Yang
Liu, Yi
CIEGAN: A Deep Learning Tool for Cell Image Enhancement
title CIEGAN: A Deep Learning Tool for Cell Image Enhancement
title_full CIEGAN: A Deep Learning Tool for Cell Image Enhancement
title_fullStr CIEGAN: A Deep Learning Tool for Cell Image Enhancement
title_full_unstemmed CIEGAN: A Deep Learning Tool for Cell Image Enhancement
title_short CIEGAN: A Deep Learning Tool for Cell Image Enhancement
title_sort ciegan: a deep learning tool for cell image enhancement
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9298179/
https://www.ncbi.nlm.nih.gov/pubmed/35873483
http://dx.doi.org/10.3389/fgene.2022.913372
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