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Se⋅⋅⋅O/S and S⋅⋅⋅O Chalcogen Bonds in Small Molecules and Proteins: A Combined CSD and PDB Study

The importance of selenium‐centered noncovalent chalcogen bonds represented as Se⋅⋅⋅A (A=O/S) has been explored for short directional contacts in small molecules and proteins. In addition, S⋅⋅⋅O centered contacts have been analyzed. Computational analyses involving the quantitative assessment of the...

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Autores principales: Biswal, Himansu S., Sahu, Akshay Kumar, Galmés, Bartomeu, Frontera, Antonio, Chopra, Deepak
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9298333/
https://www.ncbi.nlm.nih.gov/pubmed/34693623
http://dx.doi.org/10.1002/cbic.202100498
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author Biswal, Himansu S.
Sahu, Akshay Kumar
Galmés, Bartomeu
Frontera, Antonio
Chopra, Deepak
author_facet Biswal, Himansu S.
Sahu, Akshay Kumar
Galmés, Bartomeu
Frontera, Antonio
Chopra, Deepak
author_sort Biswal, Himansu S.
collection PubMed
description The importance of selenium‐centered noncovalent chalcogen bonds represented as Se⋅⋅⋅A (A=O/S) has been explored for short directional contacts in small molecules and proteins. In addition, S⋅⋅⋅O centered contacts have been analyzed. Computational analyses involving the quantitative assessment of the associated energetics, the molecular electrostatic potentials (MEP), and electron density derived topological parameters, namely, quantum theory of atom in molecules (QTAIM) analyses, and NBO (natural bond orbital) based calculations, have been performed to unequivocally establish the strength, stability, and attractive role of chalcogen bonds in the solid‐state. This investigation has been performed in molecules from both the Cambridge Structural Database (CSD) and Protein Data Bank (PDB). Thus futuristic materials may be designed keeping in mind the significance of these interactions, including their relevance in biology.
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spelling pubmed-92983332022-07-21 Se⋅⋅⋅O/S and S⋅⋅⋅O Chalcogen Bonds in Small Molecules and Proteins: A Combined CSD and PDB Study Biswal, Himansu S. Sahu, Akshay Kumar Galmés, Bartomeu Frontera, Antonio Chopra, Deepak Chembiochem Full Papers The importance of selenium‐centered noncovalent chalcogen bonds represented as Se⋅⋅⋅A (A=O/S) has been explored for short directional contacts in small molecules and proteins. In addition, S⋅⋅⋅O centered contacts have been analyzed. Computational analyses involving the quantitative assessment of the associated energetics, the molecular electrostatic potentials (MEP), and electron density derived topological parameters, namely, quantum theory of atom in molecules (QTAIM) analyses, and NBO (natural bond orbital) based calculations, have been performed to unequivocally establish the strength, stability, and attractive role of chalcogen bonds in the solid‐state. This investigation has been performed in molecules from both the Cambridge Structural Database (CSD) and Protein Data Bank (PDB). Thus futuristic materials may be designed keeping in mind the significance of these interactions, including their relevance in biology. John Wiley and Sons Inc. 2021-11-05 2022-01-19 /pmc/articles/PMC9298333/ /pubmed/34693623 http://dx.doi.org/10.1002/cbic.202100498 Text en © 2021 The Authors. ChemBioChem published by Wiley-VCH GmbH https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Full Papers
Biswal, Himansu S.
Sahu, Akshay Kumar
Galmés, Bartomeu
Frontera, Antonio
Chopra, Deepak
Se⋅⋅⋅O/S and S⋅⋅⋅O Chalcogen Bonds in Small Molecules and Proteins: A Combined CSD and PDB Study
title Se⋅⋅⋅O/S and S⋅⋅⋅O Chalcogen Bonds in Small Molecules and Proteins: A Combined CSD and PDB Study
title_full Se⋅⋅⋅O/S and S⋅⋅⋅O Chalcogen Bonds in Small Molecules and Proteins: A Combined CSD and PDB Study
title_fullStr Se⋅⋅⋅O/S and S⋅⋅⋅O Chalcogen Bonds in Small Molecules and Proteins: A Combined CSD and PDB Study
title_full_unstemmed Se⋅⋅⋅O/S and S⋅⋅⋅O Chalcogen Bonds in Small Molecules and Proteins: A Combined CSD and PDB Study
title_short Se⋅⋅⋅O/S and S⋅⋅⋅O Chalcogen Bonds in Small Molecules and Proteins: A Combined CSD and PDB Study
title_sort se⋅⋅⋅o/s and s⋅⋅⋅o chalcogen bonds in small molecules and proteins: a combined csd and pdb study
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9298333/
https://www.ncbi.nlm.nih.gov/pubmed/34693623
http://dx.doi.org/10.1002/cbic.202100498
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