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A 9-LncRNA Signature for Predicting Prognosis and Immune Response in Diffuse Large B-Cell Lymphoma
Diffuse large B-cell lymphoma (DLBCL) is a biologically and clinically heterogeneous disease that requires personalized clinical treatment. To assign patients into different risk categories, cytogenetic abnormalities and genetic mutations have been widely applied to the prognostic stratification of...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2022
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9298982/ https://www.ncbi.nlm.nih.gov/pubmed/35874768 http://dx.doi.org/10.3389/fimmu.2022.813031 |
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author | Wang, Xiaoxuan Lu, Yaxiao Liu, Ziyi Zhang, Yidan He, You Sun, Cong Li, Lanfang Zhai, Qiongli Meng, Bin Ren, Xiubao Wu, Xudong Zhang, Huilai Wang, Xianhuo |
author_facet | Wang, Xiaoxuan Lu, Yaxiao Liu, Ziyi Zhang, Yidan He, You Sun, Cong Li, Lanfang Zhai, Qiongli Meng, Bin Ren, Xiubao Wu, Xudong Zhang, Huilai Wang, Xianhuo |
author_sort | Wang, Xiaoxuan |
collection | PubMed |
description | Diffuse large B-cell lymphoma (DLBCL) is a biologically and clinically heterogeneous disease that requires personalized clinical treatment. To assign patients into different risk categories, cytogenetic abnormalities and genetic mutations have been widely applied to the prognostic stratification of DLBCL. Increasing evidence has demonstrated that deregulated epigenetic modifications and long noncoding RNAs (lncRNAs) contribute to the initiation and progression of DLBCL. However, specific lncRNAs that affect epigenetic regulation and their value in predicting prognosis and therapy response remain uncertain. Here, 2,025 epigenetic-related genes were selected, and 9 lncRNAs (PRKCQ-AS1, C22orf34, HCP5, AC007389.3, APTR, SNHG19, ELFN1-AS1, LINC00487, and LINC00877) were tested and validated to establish an lncRNA-regulating epigenetic event signature (ELncSig). ELncSig, which was established based on independent lymphoma datasets, could distinguish different survival outcomes. Functional characterization of ELncSig showed that it could be an indicator of the immune microenvironment and is correlated with distinctive mutational characteristics. Univariate and multivariate analyses showed that ELncSig was independent of traditional prognostic factors. The novel immune-related ELncSig exhibits promising clinical prognostic value for DLBCL. |
format | Online Article Text |
id | pubmed-9298982 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92989822022-07-21 A 9-LncRNA Signature for Predicting Prognosis and Immune Response in Diffuse Large B-Cell Lymphoma Wang, Xiaoxuan Lu, Yaxiao Liu, Ziyi Zhang, Yidan He, You Sun, Cong Li, Lanfang Zhai, Qiongli Meng, Bin Ren, Xiubao Wu, Xudong Zhang, Huilai Wang, Xianhuo Front Immunol Immunology Diffuse large B-cell lymphoma (DLBCL) is a biologically and clinically heterogeneous disease that requires personalized clinical treatment. To assign patients into different risk categories, cytogenetic abnormalities and genetic mutations have been widely applied to the prognostic stratification of DLBCL. Increasing evidence has demonstrated that deregulated epigenetic modifications and long noncoding RNAs (lncRNAs) contribute to the initiation and progression of DLBCL. However, specific lncRNAs that affect epigenetic regulation and their value in predicting prognosis and therapy response remain uncertain. Here, 2,025 epigenetic-related genes were selected, and 9 lncRNAs (PRKCQ-AS1, C22orf34, HCP5, AC007389.3, APTR, SNHG19, ELFN1-AS1, LINC00487, and LINC00877) were tested and validated to establish an lncRNA-regulating epigenetic event signature (ELncSig). ELncSig, which was established based on independent lymphoma datasets, could distinguish different survival outcomes. Functional characterization of ELncSig showed that it could be an indicator of the immune microenvironment and is correlated with distinctive mutational characteristics. Univariate and multivariate analyses showed that ELncSig was independent of traditional prognostic factors. The novel immune-related ELncSig exhibits promising clinical prognostic value for DLBCL. Frontiers Media S.A. 2022-07-06 /pmc/articles/PMC9298982/ /pubmed/35874768 http://dx.doi.org/10.3389/fimmu.2022.813031 Text en Copyright © 2022 Wang, Lu, Liu, Zhang, He, Sun, Li, Zhai, Meng, Ren, Wu, Zhang and Wang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Wang, Xiaoxuan Lu, Yaxiao Liu, Ziyi Zhang, Yidan He, You Sun, Cong Li, Lanfang Zhai, Qiongli Meng, Bin Ren, Xiubao Wu, Xudong Zhang, Huilai Wang, Xianhuo A 9-LncRNA Signature for Predicting Prognosis and Immune Response in Diffuse Large B-Cell Lymphoma |
title | A 9-LncRNA Signature for Predicting Prognosis and Immune Response in Diffuse Large B-Cell Lymphoma |
title_full | A 9-LncRNA Signature for Predicting Prognosis and Immune Response in Diffuse Large B-Cell Lymphoma |
title_fullStr | A 9-LncRNA Signature for Predicting Prognosis and Immune Response in Diffuse Large B-Cell Lymphoma |
title_full_unstemmed | A 9-LncRNA Signature for Predicting Prognosis and Immune Response in Diffuse Large B-Cell Lymphoma |
title_short | A 9-LncRNA Signature for Predicting Prognosis and Immune Response in Diffuse Large B-Cell Lymphoma |
title_sort | 9-lncrna signature for predicting prognosis and immune response in diffuse large b-cell lymphoma |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9298982/ https://www.ncbi.nlm.nih.gov/pubmed/35874768 http://dx.doi.org/10.3389/fimmu.2022.813031 |
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