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Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis
Plasma cells and their secreted antibodies play a central role in the long‐term protection against chronic viral infection. However, due to experimental limitations, a comprehensive description of linked genotypic, phenotypic, and antibody repertoire features of plasma cells (gene expression, clonal...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9299196/ https://www.ncbi.nlm.nih.gov/pubmed/34727578 http://dx.doi.org/10.1002/eji.202149331 |
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author | Neumeier, Daniel Pedrioli, Alessandro Genovese, Alessandro Sandu, Ioana Ehling, Roy Hong, Kai‐Lin Papadopoulou, Chrysa Agrafiotis, Andreas Kuhn, Raphael Shlesinger, Danielle Robbiani, Damiano Han, Jiami Hauri, Laura Csepregi, Lucia Greiff, Victor Merkler, Doron Reddy, Sai T. Oxenius, Annette Yermanos, Alexander |
author_facet | Neumeier, Daniel Pedrioli, Alessandro Genovese, Alessandro Sandu, Ioana Ehling, Roy Hong, Kai‐Lin Papadopoulou, Chrysa Agrafiotis, Andreas Kuhn, Raphael Shlesinger, Danielle Robbiani, Damiano Han, Jiami Hauri, Laura Csepregi, Lucia Greiff, Victor Merkler, Doron Reddy, Sai T. Oxenius, Annette Yermanos, Alexander |
author_sort | Neumeier, Daniel |
collection | PubMed |
description | Plasma cells and their secreted antibodies play a central role in the long‐term protection against chronic viral infection. However, due to experimental limitations, a comprehensive description of linked genotypic, phenotypic, and antibody repertoire features of plasma cells (gene expression, clonal frequency, virus specificity, and affinity) has been challenging to obtain. To address this, we performed single‐cell transcriptome and antibody repertoire sequencing of the murine BM plasma cell population following chronic lymphocytic choriomeningitis virus infection. Our single‐cell sequencing approach recovered full‐length and paired heavy‐ and light‐chain sequence information for thousands of plasma cells and enabled us to perform recombinant antibody expression and specificity screening. Antibody repertoire analysis revealed that, relative to protein immunization, chronic infection led to increased levels of clonal expansion, class‐switching, and somatic variants. Furthermore, antibodies from the highly expanded and class‐switched (IgG) plasma cells were found to be specific for multiple viral antigens and a subset of clones exhibited cross‐reactivity to nonviral and autoantigens. Integrating single‐cell transcriptome data with antibody specificity suggested that plasma cell transcriptional phenotype was correlated to viral antigen specificity. Our findings demonstrate that chronic viral infection can induce and sustain plasma cell clonal expansion, combined with significant somatic hypermutation, and can generate cross‐reactive antibodies. |
format | Online Article Text |
id | pubmed-9299196 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-92991962022-07-21 Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis Neumeier, Daniel Pedrioli, Alessandro Genovese, Alessandro Sandu, Ioana Ehling, Roy Hong, Kai‐Lin Papadopoulou, Chrysa Agrafiotis, Andreas Kuhn, Raphael Shlesinger, Danielle Robbiani, Damiano Han, Jiami Hauri, Laura Csepregi, Lucia Greiff, Victor Merkler, Doron Reddy, Sai T. Oxenius, Annette Yermanos, Alexander Eur J Immunol Immunity to infection Plasma cells and their secreted antibodies play a central role in the long‐term protection against chronic viral infection. However, due to experimental limitations, a comprehensive description of linked genotypic, phenotypic, and antibody repertoire features of plasma cells (gene expression, clonal frequency, virus specificity, and affinity) has been challenging to obtain. To address this, we performed single‐cell transcriptome and antibody repertoire sequencing of the murine BM plasma cell population following chronic lymphocytic choriomeningitis virus infection. Our single‐cell sequencing approach recovered full‐length and paired heavy‐ and light‐chain sequence information for thousands of plasma cells and enabled us to perform recombinant antibody expression and specificity screening. Antibody repertoire analysis revealed that, relative to protein immunization, chronic infection led to increased levels of clonal expansion, class‐switching, and somatic variants. Furthermore, antibodies from the highly expanded and class‐switched (IgG) plasma cells were found to be specific for multiple viral antigens and a subset of clones exhibited cross‐reactivity to nonviral and autoantigens. Integrating single‐cell transcriptome data with antibody specificity suggested that plasma cell transcriptional phenotype was correlated to viral antigen specificity. Our findings demonstrate that chronic viral infection can induce and sustain plasma cell clonal expansion, combined with significant somatic hypermutation, and can generate cross‐reactive antibodies. John Wiley and Sons Inc. 2021-11-23 2022-02 /pmc/articles/PMC9299196/ /pubmed/34727578 http://dx.doi.org/10.1002/eji.202149331 Text en © 2021 The Authors. European Journal of Immunology published by Wiley‐VCH GmbH https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Immunity to infection Neumeier, Daniel Pedrioli, Alessandro Genovese, Alessandro Sandu, Ioana Ehling, Roy Hong, Kai‐Lin Papadopoulou, Chrysa Agrafiotis, Andreas Kuhn, Raphael Shlesinger, Danielle Robbiani, Damiano Han, Jiami Hauri, Laura Csepregi, Lucia Greiff, Victor Merkler, Doron Reddy, Sai T. Oxenius, Annette Yermanos, Alexander Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis |
title | Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis |
title_full | Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis |
title_fullStr | Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis |
title_full_unstemmed | Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis |
title_short | Profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis |
title_sort | profiling the specificity of clonally expanded plasma cells during chronic viral infection by single‐cell analysis |
topic | Immunity to infection |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9299196/ https://www.ncbi.nlm.nih.gov/pubmed/34727578 http://dx.doi.org/10.1002/eji.202149331 |
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