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Mathematical modeling of the impact of Omicron variant on the COVID-19 situation in South Korea

The rise of newer coronavirus disease 2019 (COVID-19) variants has brought a challenge to ending the spread of COVID-19. The variants have a different fatality, morbidity, and transmission rates and affect vaccine efficacy differently. Therefore, the impact of each new variant on the spread of COVID...

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Autores principales: Oh, Jooha, Apio, Catherine, Park, Taesung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9299565/
https://www.ncbi.nlm.nih.gov/pubmed/35794702
http://dx.doi.org/10.5808/gi.22025
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author Oh, Jooha
Apio, Catherine
Park, Taesung
author_facet Oh, Jooha
Apio, Catherine
Park, Taesung
author_sort Oh, Jooha
collection PubMed
description The rise of newer coronavirus disease 2019 (COVID-19) variants has brought a challenge to ending the spread of COVID-19. The variants have a different fatality, morbidity, and transmission rates and affect vaccine efficacy differently. Therefore, the impact of each new variant on the spread of COVID-19 is of interest to governments and scientists. Here, we proposed mathematical SEIQRDVP and SEIQRDV3P models to predict the impact of the Omicron variant on the spread of the COVID-19 situation in South Korea. SEIQEDVP considers one vaccine level at a time while SEIQRDV3P considers three vaccination levels (only one dose received, full doses received, and full doses + booster shots received) simultaneously. The Omicron variant’s effect was contemplated as a weighted sum of the delta and Omicron variants’ transmission rate and tuned using a hyperparameter k. Our models’ performances were compared with common models like SEIR, SEIQR, and SEIQRDVUP using the root mean square error (RMSE). SEIQRDV3P performed better than the SEIQRDVP model. Without consideration of the variant effect, we don’t see a rapid rise in COVID-19 cases and high RMSE values. But, with consideration of the Omicron variant, we predicted a continuous rapid rise in COVID-19 cases until maybe herd immunity is developed in the population. Also, the RMSE value for the SEIQRDV3P model decreased by 27.4%. Therefore, modeling the impact of any new risen variant is crucial in determining the trajectory of the spread of COVID-19 and determining policies to be implemented.
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spelling pubmed-92995652022-07-25 Mathematical modeling of the impact of Omicron variant on the COVID-19 situation in South Korea Oh, Jooha Apio, Catherine Park, Taesung Genomics Inform Original Article The rise of newer coronavirus disease 2019 (COVID-19) variants has brought a challenge to ending the spread of COVID-19. The variants have a different fatality, morbidity, and transmission rates and affect vaccine efficacy differently. Therefore, the impact of each new variant on the spread of COVID-19 is of interest to governments and scientists. Here, we proposed mathematical SEIQRDVP and SEIQRDV3P models to predict the impact of the Omicron variant on the spread of the COVID-19 situation in South Korea. SEIQEDVP considers one vaccine level at a time while SEIQRDV3P considers three vaccination levels (only one dose received, full doses received, and full doses + booster shots received) simultaneously. The Omicron variant’s effect was contemplated as a weighted sum of the delta and Omicron variants’ transmission rate and tuned using a hyperparameter k. Our models’ performances were compared with common models like SEIR, SEIQR, and SEIQRDVUP using the root mean square error (RMSE). SEIQRDV3P performed better than the SEIQRDVP model. Without consideration of the variant effect, we don’t see a rapid rise in COVID-19 cases and high RMSE values. But, with consideration of the Omicron variant, we predicted a continuous rapid rise in COVID-19 cases until maybe herd immunity is developed in the population. Also, the RMSE value for the SEIQRDV3P model decreased by 27.4%. Therefore, modeling the impact of any new risen variant is crucial in determining the trajectory of the spread of COVID-19 and determining policies to be implemented. Korea Genome Organization 2022-06-30 /pmc/articles/PMC9299565/ /pubmed/35794702 http://dx.doi.org/10.5808/gi.22025 Text en (c) 2022, Korea Genome Organization https://creativecommons.org/licenses/by/4.0/(CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Oh, Jooha
Apio, Catherine
Park, Taesung
Mathematical modeling of the impact of Omicron variant on the COVID-19 situation in South Korea
title Mathematical modeling of the impact of Omicron variant on the COVID-19 situation in South Korea
title_full Mathematical modeling of the impact of Omicron variant on the COVID-19 situation in South Korea
title_fullStr Mathematical modeling of the impact of Omicron variant on the COVID-19 situation in South Korea
title_full_unstemmed Mathematical modeling of the impact of Omicron variant on the COVID-19 situation in South Korea
title_short Mathematical modeling of the impact of Omicron variant on the COVID-19 situation in South Korea
title_sort mathematical modeling of the impact of omicron variant on the covid-19 situation in south korea
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9299565/
https://www.ncbi.nlm.nih.gov/pubmed/35794702
http://dx.doi.org/10.5808/gi.22025
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