Cargando…

Toward the robust resolution of taxonomic ambiguity within Lepocinclis (Euglenida) based on DNA sequencing and morphology

DNA sequences were analyzed for three groups of species from the Lepocinclis genus (L. acus‐like, L. oxyuris‐like, and L. tripteris‐like) along with cellular morphology. Phylogenetic analyses were based on nuclear SSU rDNA, LSU rDNA, and plastid‐encoded LSU rDNA. DNA sequences were obtained from spe...

Descripción completa

Detalles Bibliográficos
Autores principales: Chaber, Katarzyna, Łukomska‐Kowalczyk, Maja, Fells, Alicja, Milanowski, Rafał, Zakryś, Bożena
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9300208/
https://www.ncbi.nlm.nih.gov/pubmed/34719033
http://dx.doi.org/10.1111/jpy.13220
_version_ 1784751159824613376
author Chaber, Katarzyna
Łukomska‐Kowalczyk, Maja
Fells, Alicja
Milanowski, Rafał
Zakryś, Bożena
author_facet Chaber, Katarzyna
Łukomska‐Kowalczyk, Maja
Fells, Alicja
Milanowski, Rafał
Zakryś, Bożena
author_sort Chaber, Katarzyna
collection PubMed
description DNA sequences were analyzed for three groups of species from the Lepocinclis genus (L. acus‐like, L. oxyuris‐like, and L. tripteris‐like) along with cellular morphology. Phylogenetic analyses were based on nuclear SSU rDNA, LSU rDNA, and plastid‐encoded LSU rDNA. DNA sequences were obtained from species available in culture collections (L. acus SAG 1224‐1a and UTEX 1316) and those isolated directly from the environment in Poland (48 isolates), resulting in 79 new sequences. The obtained phylogenetic tree of Lepocinclis included 27 taxa, five of which are presented for the first time (L. convoluta, L. gracillimoides, L. longissima, L. pseudospiroides, and L. torta) and nine taxonomically verified and described. Based on morphology, literature data, and phylogenetic analyses, the following species were distinguished: in the L. acus‐like group, L. longissima and L. acus; in the L. tripteris‐like group, L. pseudospiroides, L. torta, and L. tripteris; in the L. oxyuris‐like group, L. gracillimoides, L. oxyuris var. oxyuris, and L. oxyuris var. helicoidea. For all verified species, diagnostic descriptions were emended, nomenclatural adjustments were made, and epitypes were designated.
format Online
Article
Text
id pubmed-9300208
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-93002082022-07-21 Toward the robust resolution of taxonomic ambiguity within Lepocinclis (Euglenida) based on DNA sequencing and morphology Chaber, Katarzyna Łukomska‐Kowalczyk, Maja Fells, Alicja Milanowski, Rafał Zakryś, Bożena J Phycol Research Articles DNA sequences were analyzed for three groups of species from the Lepocinclis genus (L. acus‐like, L. oxyuris‐like, and L. tripteris‐like) along with cellular morphology. Phylogenetic analyses were based on nuclear SSU rDNA, LSU rDNA, and plastid‐encoded LSU rDNA. DNA sequences were obtained from species available in culture collections (L. acus SAG 1224‐1a and UTEX 1316) and those isolated directly from the environment in Poland (48 isolates), resulting in 79 new sequences. The obtained phylogenetic tree of Lepocinclis included 27 taxa, five of which are presented for the first time (L. convoluta, L. gracillimoides, L. longissima, L. pseudospiroides, and L. torta) and nine taxonomically verified and described. Based on morphology, literature data, and phylogenetic analyses, the following species were distinguished: in the L. acus‐like group, L. longissima and L. acus; in the L. tripteris‐like group, L. pseudospiroides, L. torta, and L. tripteris; in the L. oxyuris‐like group, L. gracillimoides, L. oxyuris var. oxyuris, and L. oxyuris var. helicoidea. For all verified species, diagnostic descriptions were emended, nomenclatural adjustments were made, and epitypes were designated. John Wiley and Sons Inc. 2021-12-06 2022-02 /pmc/articles/PMC9300208/ /pubmed/34719033 http://dx.doi.org/10.1111/jpy.13220 Text en © 2021 The Authors. Journal of Phycology published by Wiley Periodicals LLC on behalf of Phycological Society of America https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Research Articles
Chaber, Katarzyna
Łukomska‐Kowalczyk, Maja
Fells, Alicja
Milanowski, Rafał
Zakryś, Bożena
Toward the robust resolution of taxonomic ambiguity within Lepocinclis (Euglenida) based on DNA sequencing and morphology
title Toward the robust resolution of taxonomic ambiguity within Lepocinclis (Euglenida) based on DNA sequencing and morphology
title_full Toward the robust resolution of taxonomic ambiguity within Lepocinclis (Euglenida) based on DNA sequencing and morphology
title_fullStr Toward the robust resolution of taxonomic ambiguity within Lepocinclis (Euglenida) based on DNA sequencing and morphology
title_full_unstemmed Toward the robust resolution of taxonomic ambiguity within Lepocinclis (Euglenida) based on DNA sequencing and morphology
title_short Toward the robust resolution of taxonomic ambiguity within Lepocinclis (Euglenida) based on DNA sequencing and morphology
title_sort toward the robust resolution of taxonomic ambiguity within lepocinclis (euglenida) based on dna sequencing and morphology
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9300208/
https://www.ncbi.nlm.nih.gov/pubmed/34719033
http://dx.doi.org/10.1111/jpy.13220
work_keys_str_mv AT chaberkatarzyna towardtherobustresolutionoftaxonomicambiguitywithinlepocincliseuglenidabasedondnasequencingandmorphology
AT łukomskakowalczykmaja towardtherobustresolutionoftaxonomicambiguitywithinlepocincliseuglenidabasedondnasequencingandmorphology
AT fellsalicja towardtherobustresolutionoftaxonomicambiguitywithinlepocincliseuglenidabasedondnasequencingandmorphology
AT milanowskirafał towardtherobustresolutionoftaxonomicambiguitywithinlepocincliseuglenidabasedondnasequencingandmorphology
AT zakrysbozena towardtherobustresolutionoftaxonomicambiguitywithinlepocincliseuglenidabasedondnasequencingandmorphology