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Finding Gene Regulatory Networks in Psoriasis: Application of a Tree-Based Machine Learning Approach
Psoriasis is a chronic inflammatory skin disorder. Although it has been studied extensively, the molecular mechanisms driving the disease remain unclear. In this study, we utilized a tree-based machine learning approach to explore the gene regulatory networks underlying psoriasis. We then validated...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9301015/ https://www.ncbi.nlm.nih.gov/pubmed/35874668 http://dx.doi.org/10.3389/fimmu.2022.921408 |
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author | Deng, Jingwen Schieler, Carlotta Borghans, José A. M. Lu, Chuanjian Pandit, Aridaman |
author_facet | Deng, Jingwen Schieler, Carlotta Borghans, José A. M. Lu, Chuanjian Pandit, Aridaman |
author_sort | Deng, Jingwen |
collection | PubMed |
description | Psoriasis is a chronic inflammatory skin disorder. Although it has been studied extensively, the molecular mechanisms driving the disease remain unclear. In this study, we utilized a tree-based machine learning approach to explore the gene regulatory networks underlying psoriasis. We then validated the regulators and their networks in an independent cohort. We identified some key regulators of psoriasis, which are candidates to serve as potential drug targets and disease severity biomarkers. According to the gene regulatory network that we identified, we suggest that interferon signaling represents a key pathway of psoriatic inflammation. |
format | Online Article Text |
id | pubmed-9301015 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93010152022-07-22 Finding Gene Regulatory Networks in Psoriasis: Application of a Tree-Based Machine Learning Approach Deng, Jingwen Schieler, Carlotta Borghans, José A. M. Lu, Chuanjian Pandit, Aridaman Front Immunol Immunology Psoriasis is a chronic inflammatory skin disorder. Although it has been studied extensively, the molecular mechanisms driving the disease remain unclear. In this study, we utilized a tree-based machine learning approach to explore the gene regulatory networks underlying psoriasis. We then validated the regulators and their networks in an independent cohort. We identified some key regulators of psoriasis, which are candidates to serve as potential drug targets and disease severity biomarkers. According to the gene regulatory network that we identified, we suggest that interferon signaling represents a key pathway of psoriatic inflammation. Frontiers Media S.A. 2022-07-07 /pmc/articles/PMC9301015/ /pubmed/35874668 http://dx.doi.org/10.3389/fimmu.2022.921408 Text en Copyright © 2022 Deng, Schieler, Borghans, Lu and Pandit https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Immunology Deng, Jingwen Schieler, Carlotta Borghans, José A. M. Lu, Chuanjian Pandit, Aridaman Finding Gene Regulatory Networks in Psoriasis: Application of a Tree-Based Machine Learning Approach |
title | Finding Gene Regulatory Networks in Psoriasis: Application of a Tree-Based Machine Learning Approach |
title_full | Finding Gene Regulatory Networks in Psoriasis: Application of a Tree-Based Machine Learning Approach |
title_fullStr | Finding Gene Regulatory Networks in Psoriasis: Application of a Tree-Based Machine Learning Approach |
title_full_unstemmed | Finding Gene Regulatory Networks in Psoriasis: Application of a Tree-Based Machine Learning Approach |
title_short | Finding Gene Regulatory Networks in Psoriasis: Application of a Tree-Based Machine Learning Approach |
title_sort | finding gene regulatory networks in psoriasis: application of a tree-based machine learning approach |
topic | Immunology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9301015/ https://www.ncbi.nlm.nih.gov/pubmed/35874668 http://dx.doi.org/10.3389/fimmu.2022.921408 |
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