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Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic

The coding-complete genome sequence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was obtained from 39 nasopharyngeal swab samples collected in January 2022 from Dhaka, Bangladesh, during the 3rd wave of the COVID-19 pandemic, using Illumina MiniSeq sequencing technology. Sequence...

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Autores principales: Jahan, Munira, Nasif, M. Abdullah Omar, Rahmat, Raad, Islam, SM Rashed Ul, Munshi, Saif Ullah, Ahmed, M. Sharfuddin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9302173/
https://www.ncbi.nlm.nih.gov/pubmed/35638826
http://dx.doi.org/10.1128/mra.00381-22
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author Jahan, Munira
Nasif, M. Abdullah Omar
Rahmat, Raad
Islam, SM Rashed Ul
Munshi, Saif Ullah
Ahmed, M. Sharfuddin
author_facet Jahan, Munira
Nasif, M. Abdullah Omar
Rahmat, Raad
Islam, SM Rashed Ul
Munshi, Saif Ullah
Ahmed, M. Sharfuddin
author_sort Jahan, Munira
collection PubMed
description The coding-complete genome sequence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was obtained from 39 nasopharyngeal swab samples collected in January 2022 from Dhaka, Bangladesh, during the 3rd wave of the COVID-19 pandemic, using Illumina MiniSeq sequencing technology. Sequence analysis showed that all of them belonged to the WHO-designated variant of concern (VOC) Omicron. The presence of different sublineages of Omicron was noted, among which sublineage BA.2 (Nextstrain clade 21L) was the most prevalent one.
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spelling pubmed-93021732022-07-22 Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic Jahan, Munira Nasif, M. Abdullah Omar Rahmat, Raad Islam, SM Rashed Ul Munshi, Saif Ullah Ahmed, M. Sharfuddin Microbiol Resour Announc Genome Sequences The coding-complete genome sequence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was obtained from 39 nasopharyngeal swab samples collected in January 2022 from Dhaka, Bangladesh, during the 3rd wave of the COVID-19 pandemic, using Illumina MiniSeq sequencing technology. Sequence analysis showed that all of them belonged to the WHO-designated variant of concern (VOC) Omicron. The presence of different sublineages of Omicron was noted, among which sublineage BA.2 (Nextstrain clade 21L) was the most prevalent one. American Society for Microbiology 2022-05-31 /pmc/articles/PMC9302173/ /pubmed/35638826 http://dx.doi.org/10.1128/mra.00381-22 Text en Copyright © 2022 Jahan et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Genome Sequences
Jahan, Munira
Nasif, M. Abdullah Omar
Rahmat, Raad
Islam, SM Rashed Ul
Munshi, Saif Ullah
Ahmed, M. Sharfuddin
Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic
title Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic
title_full Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic
title_fullStr Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic
title_full_unstemmed Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic
title_short Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic
title_sort genome sequencing of omicron variants of sars-cov-2 circulating in bangladesh during the third wave of the covid-19 pandemic
topic Genome Sequences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9302173/
https://www.ncbi.nlm.nih.gov/pubmed/35638826
http://dx.doi.org/10.1128/mra.00381-22
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