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Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic
The coding-complete genome sequence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was obtained from 39 nasopharyngeal swab samples collected in January 2022 from Dhaka, Bangladesh, during the 3rd wave of the COVID-19 pandemic, using Illumina MiniSeq sequencing technology. Sequence...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society for Microbiology
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9302173/ https://www.ncbi.nlm.nih.gov/pubmed/35638826 http://dx.doi.org/10.1128/mra.00381-22 |
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author | Jahan, Munira Nasif, M. Abdullah Omar Rahmat, Raad Islam, SM Rashed Ul Munshi, Saif Ullah Ahmed, M. Sharfuddin |
author_facet | Jahan, Munira Nasif, M. Abdullah Omar Rahmat, Raad Islam, SM Rashed Ul Munshi, Saif Ullah Ahmed, M. Sharfuddin |
author_sort | Jahan, Munira |
collection | PubMed |
description | The coding-complete genome sequence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was obtained from 39 nasopharyngeal swab samples collected in January 2022 from Dhaka, Bangladesh, during the 3rd wave of the COVID-19 pandemic, using Illumina MiniSeq sequencing technology. Sequence analysis showed that all of them belonged to the WHO-designated variant of concern (VOC) Omicron. The presence of different sublineages of Omicron was noted, among which sublineage BA.2 (Nextstrain clade 21L) was the most prevalent one. |
format | Online Article Text |
id | pubmed-9302173 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | American Society for Microbiology |
record_format | MEDLINE/PubMed |
spelling | pubmed-93021732022-07-22 Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic Jahan, Munira Nasif, M. Abdullah Omar Rahmat, Raad Islam, SM Rashed Ul Munshi, Saif Ullah Ahmed, M. Sharfuddin Microbiol Resour Announc Genome Sequences The coding-complete genome sequence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was obtained from 39 nasopharyngeal swab samples collected in January 2022 from Dhaka, Bangladesh, during the 3rd wave of the COVID-19 pandemic, using Illumina MiniSeq sequencing technology. Sequence analysis showed that all of them belonged to the WHO-designated variant of concern (VOC) Omicron. The presence of different sublineages of Omicron was noted, among which sublineage BA.2 (Nextstrain clade 21L) was the most prevalent one. American Society for Microbiology 2022-05-31 /pmc/articles/PMC9302173/ /pubmed/35638826 http://dx.doi.org/10.1128/mra.00381-22 Text en Copyright © 2022 Jahan et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Genome Sequences Jahan, Munira Nasif, M. Abdullah Omar Rahmat, Raad Islam, SM Rashed Ul Munshi, Saif Ullah Ahmed, M. Sharfuddin Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic |
title | Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic |
title_full | Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic |
title_fullStr | Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic |
title_full_unstemmed | Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic |
title_short | Genome Sequencing of Omicron Variants of SARS-CoV-2 Circulating in Bangladesh during the Third Wave of the COVID-19 Pandemic |
title_sort | genome sequencing of omicron variants of sars-cov-2 circulating in bangladesh during the third wave of the covid-19 pandemic |
topic | Genome Sequences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9302173/ https://www.ncbi.nlm.nih.gov/pubmed/35638826 http://dx.doi.org/10.1128/mra.00381-22 |
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