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Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19
To tune and test the generalizability of a deep learning-based model for assessment of COVID-19 lung disease severity on chest radiographs (CXRs) from different patient populations. A published convolutional Siamese neural network-based model previously trained on hospitalized patients with COVID-19...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Lippincott Williams & Wilkins
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9302282/ https://www.ncbi.nlm.nih.gov/pubmed/35866818 http://dx.doi.org/10.1097/MD.0000000000029587 |
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author | Li, Matthew D. Arun, Nishanth T. Aggarwal, Mehak Gupta, Sharut Singh, Praveer Little, Brent P. Mendoza, Dexter P. Corradi, Gustavo C.A. Takahashi, Marcelo S. Ferraciolli, Suely F. Succi, Marc D. Lang, Min Bizzo, Bernardo C. Dayan, Ittai Kitamura, Felipe C. Kalpathy-Cramer, Jayashree |
author_facet | Li, Matthew D. Arun, Nishanth T. Aggarwal, Mehak Gupta, Sharut Singh, Praveer Little, Brent P. Mendoza, Dexter P. Corradi, Gustavo C.A. Takahashi, Marcelo S. Ferraciolli, Suely F. Succi, Marc D. Lang, Min Bizzo, Bernardo C. Dayan, Ittai Kitamura, Felipe C. Kalpathy-Cramer, Jayashree |
author_sort | Li, Matthew D. |
collection | PubMed |
description | To tune and test the generalizability of a deep learning-based model for assessment of COVID-19 lung disease severity on chest radiographs (CXRs) from different patient populations. A published convolutional Siamese neural network-based model previously trained on hospitalized patients with COVID-19 was tuned using 250 outpatient CXRs. This model produces a quantitative measure of COVID-19 lung disease severity (pulmonary x-ray severity (PXS) score). The model was evaluated on CXRs from 4 test sets, including 3 from the United States (patients hospitalized at an academic medical center (N = 154), patients hospitalized at a community hospital (N = 113), and outpatients (N = 108)) and 1 from Brazil (patients at an academic medical center emergency department (N = 303)). Radiologists from both countries independently assigned reference standard CXR severity scores, which were correlated with the PXS scores as a measure of model performance (Pearson R). The Uniform Manifold Approximation and Projection (UMAP) technique was used to visualize the neural network results. Tuning the deep learning model with outpatient data showed high model performance in 2 United States hospitalized patient datasets (R = 0.88 and R = 0.90, compared to baseline R = 0.86). Model performance was similar, though slightly lower, when tested on the United States outpatient and Brazil emergency department datasets (R = 0.86 and R = 0.85, respectively). UMAP showed that the model learned disease severity information that generalized across test sets. A deep learning model that extracts a COVID-19 severity score on CXRs showed generalizable performance across multiple populations from 2 continents, including outpatients and hospitalized patients. |
format | Online Article Text |
id | pubmed-9302282 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Lippincott Williams & Wilkins |
record_format | MEDLINE/PubMed |
spelling | pubmed-93022822022-08-03 Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19 Li, Matthew D. Arun, Nishanth T. Aggarwal, Mehak Gupta, Sharut Singh, Praveer Little, Brent P. Mendoza, Dexter P. Corradi, Gustavo C.A. Takahashi, Marcelo S. Ferraciolli, Suely F. Succi, Marc D. Lang, Min Bizzo, Bernardo C. Dayan, Ittai Kitamura, Felipe C. Kalpathy-Cramer, Jayashree Medicine (Baltimore) Research Article To tune and test the generalizability of a deep learning-based model for assessment of COVID-19 lung disease severity on chest radiographs (CXRs) from different patient populations. A published convolutional Siamese neural network-based model previously trained on hospitalized patients with COVID-19 was tuned using 250 outpatient CXRs. This model produces a quantitative measure of COVID-19 lung disease severity (pulmonary x-ray severity (PXS) score). The model was evaluated on CXRs from 4 test sets, including 3 from the United States (patients hospitalized at an academic medical center (N = 154), patients hospitalized at a community hospital (N = 113), and outpatients (N = 108)) and 1 from Brazil (patients at an academic medical center emergency department (N = 303)). Radiologists from both countries independently assigned reference standard CXR severity scores, which were correlated with the PXS scores as a measure of model performance (Pearson R). The Uniform Manifold Approximation and Projection (UMAP) technique was used to visualize the neural network results. Tuning the deep learning model with outpatient data showed high model performance in 2 United States hospitalized patient datasets (R = 0.88 and R = 0.90, compared to baseline R = 0.86). Model performance was similar, though slightly lower, when tested on the United States outpatient and Brazil emergency department datasets (R = 0.86 and R = 0.85, respectively). UMAP showed that the model learned disease severity information that generalized across test sets. A deep learning model that extracts a COVID-19 severity score on CXRs showed generalizable performance across multiple populations from 2 continents, including outpatients and hospitalized patients. Lippincott Williams & Wilkins 2022-07-22 /pmc/articles/PMC9302282/ /pubmed/35866818 http://dx.doi.org/10.1097/MD.0000000000029587 Text en Copyright © 2022 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal. |
spellingShingle | Research Article Li, Matthew D. Arun, Nishanth T. Aggarwal, Mehak Gupta, Sharut Singh, Praveer Little, Brent P. Mendoza, Dexter P. Corradi, Gustavo C.A. Takahashi, Marcelo S. Ferraciolli, Suely F. Succi, Marc D. Lang, Min Bizzo, Bernardo C. Dayan, Ittai Kitamura, Felipe C. Kalpathy-Cramer, Jayashree Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19 |
title | Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19 |
title_full | Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19 |
title_fullStr | Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19 |
title_full_unstemmed | Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19 |
title_short | Multi-population generalizability of a deep learning-based chest radiograph severity score for COVID-19 |
title_sort | multi-population generalizability of a deep learning-based chest radiograph severity score for covid-19 |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9302282/ https://www.ncbi.nlm.nih.gov/pubmed/35866818 http://dx.doi.org/10.1097/MD.0000000000029587 |
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