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An approach for open multivariate analysis of integrated clinical and environmental exposures data

The Integrated Clinical and Environmental Exposures Service (ICEES) provides regulatory-compliant open access to sensitive patient data that have been integrated with public exposures data. ICEES was designed initially to support dynamic cohort creation and bivariate contingency tests. The objective...

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Autores principales: Fecho, Karamarie, Haaland, Perry, Krishnamurthy, Ashok, Lan, Bo, Ramsey, Stephen A., Schmitt, Patrick L., Sharma, Priya, Sinha, Meghamala, Xu, Hao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9302917/
https://www.ncbi.nlm.nih.gov/pubmed/35875189
http://dx.doi.org/10.1016/j.imu.2021.100733
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author Fecho, Karamarie
Haaland, Perry
Krishnamurthy, Ashok
Lan, Bo
Ramsey, Stephen A.
Schmitt, Patrick L.
Sharma, Priya
Sinha, Meghamala
Xu, Hao
author_facet Fecho, Karamarie
Haaland, Perry
Krishnamurthy, Ashok
Lan, Bo
Ramsey, Stephen A.
Schmitt, Patrick L.
Sharma, Priya
Sinha, Meghamala
Xu, Hao
author_sort Fecho, Karamarie
collection PubMed
description The Integrated Clinical and Environmental Exposures Service (ICEES) provides regulatory-compliant open access to sensitive patient data that have been integrated with public exposures data. ICEES was designed initially to support dynamic cohort creation and bivariate contingency tests. The objective of the present study was to develop an open approach to support multivariate analyses using existing ICEES functionalities and abiding by all regulatory constraints. We first developed an open approach for generating a multivariate table that maintains contingencies between clinical and environmental variables using programmatic calls to the open ICEES application programming interface. We then applied the approach to data on a large cohort (N = 22,365) of patients with asthma or related conditions and generated an eight-feature table. Due to regulatory constraints, data loss was incurred with the incorporation of each successive feature variable, from a starting sample size of N = 22,365 to a final sample size of N = 4,556 (20.4%), but data loss was < 10% until the addition of the final two feature variables. We then applied a generalized linear model to the subsequent dataset and focused on the impact of seven select feature variables on asthma exacerbations, defined as annual emergency department or inpatient visits for respiratory issues. We identified five feature variables—sex, race, obesity, prednisone, and airborne particulate exposure—as significant predictors of asthma exacerbations. We discuss the advantages and disadvantages of ICEES open multivariate analysis and conclude that, despite limitations, ICEES can provide a valuable resource for open multivariate analysis and can serve as an exemplar for regulatory-compliant informatic solutions to open patient data, with capabilities to explore the impact of environmental exposures on health outcomes.
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spelling pubmed-93029172022-07-21 An approach for open multivariate analysis of integrated clinical and environmental exposures data Fecho, Karamarie Haaland, Perry Krishnamurthy, Ashok Lan, Bo Ramsey, Stephen A. Schmitt, Patrick L. Sharma, Priya Sinha, Meghamala Xu, Hao Inform Med Unlocked Article The Integrated Clinical and Environmental Exposures Service (ICEES) provides regulatory-compliant open access to sensitive patient data that have been integrated with public exposures data. ICEES was designed initially to support dynamic cohort creation and bivariate contingency tests. The objective of the present study was to develop an open approach to support multivariate analyses using existing ICEES functionalities and abiding by all regulatory constraints. We first developed an open approach for generating a multivariate table that maintains contingencies between clinical and environmental variables using programmatic calls to the open ICEES application programming interface. We then applied the approach to data on a large cohort (N = 22,365) of patients with asthma or related conditions and generated an eight-feature table. Due to regulatory constraints, data loss was incurred with the incorporation of each successive feature variable, from a starting sample size of N = 22,365 to a final sample size of N = 4,556 (20.4%), but data loss was < 10% until the addition of the final two feature variables. We then applied a generalized linear model to the subsequent dataset and focused on the impact of seven select feature variables on asthma exacerbations, defined as annual emergency department or inpatient visits for respiratory issues. We identified five feature variables—sex, race, obesity, prednisone, and airborne particulate exposure—as significant predictors of asthma exacerbations. We discuss the advantages and disadvantages of ICEES open multivariate analysis and conclude that, despite limitations, ICEES can provide a valuable resource for open multivariate analysis and can serve as an exemplar for regulatory-compliant informatic solutions to open patient data, with capabilities to explore the impact of environmental exposures on health outcomes. 2021 2021-09-20 /pmc/articles/PMC9302917/ /pubmed/35875189 http://dx.doi.org/10.1016/j.imu.2021.100733 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) ).
spellingShingle Article
Fecho, Karamarie
Haaland, Perry
Krishnamurthy, Ashok
Lan, Bo
Ramsey, Stephen A.
Schmitt, Patrick L.
Sharma, Priya
Sinha, Meghamala
Xu, Hao
An approach for open multivariate analysis of integrated clinical and environmental exposures data
title An approach for open multivariate analysis of integrated clinical and environmental exposures data
title_full An approach for open multivariate analysis of integrated clinical and environmental exposures data
title_fullStr An approach for open multivariate analysis of integrated clinical and environmental exposures data
title_full_unstemmed An approach for open multivariate analysis of integrated clinical and environmental exposures data
title_short An approach for open multivariate analysis of integrated clinical and environmental exposures data
title_sort approach for open multivariate analysis of integrated clinical and environmental exposures data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9302917/
https://www.ncbi.nlm.nih.gov/pubmed/35875189
http://dx.doi.org/10.1016/j.imu.2021.100733
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