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Ecological inference using data from accelerometers needs careful protocols

1. Accelerometers in animal‐attached tags are powerful tools in behavioural ecology, they can be used to determine behaviour and provide proxies for movement‐based energy expenditure. Researchers are collecting and archiving data across systems, seasons and device types. However, using data reposito...

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Autores principales: Garde, Baptiste, Wilson, Rory P., Fell, Adam, Cole, Nik, Tatayah, Vikash, Holton, Mark D., Rose, Kayleigh A. R., Metcalfe, Richard S., Robotka, Hermina, Wikelski, Martin, Tremblay, Fred, Whelan, Shannon, Elliott, Kyle H., Shepard, Emily L. C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9303593/
https://www.ncbi.nlm.nih.gov/pubmed/35910299
http://dx.doi.org/10.1111/2041-210X.13804
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author Garde, Baptiste
Wilson, Rory P.
Fell, Adam
Cole, Nik
Tatayah, Vikash
Holton, Mark D.
Rose, Kayleigh A. R.
Metcalfe, Richard S.
Robotka, Hermina
Wikelski, Martin
Tremblay, Fred
Whelan, Shannon
Elliott, Kyle H.
Shepard, Emily L. C.
author_facet Garde, Baptiste
Wilson, Rory P.
Fell, Adam
Cole, Nik
Tatayah, Vikash
Holton, Mark D.
Rose, Kayleigh A. R.
Metcalfe, Richard S.
Robotka, Hermina
Wikelski, Martin
Tremblay, Fred
Whelan, Shannon
Elliott, Kyle H.
Shepard, Emily L. C.
author_sort Garde, Baptiste
collection PubMed
description 1. Accelerometers in animal‐attached tags are powerful tools in behavioural ecology, they can be used to determine behaviour and provide proxies for movement‐based energy expenditure. Researchers are collecting and archiving data across systems, seasons and device types. However, using data repositories to draw ecological inference requires a good understanding of the error introduced according to sensor type and position on the study animal and protocols for error assessment and minimisation. 2. Using laboratory trials, we examine the absolute accuracy of tri‐axial accelerometers and determine how inaccuracies impact measurements of dynamic body acceleration (DBA), a proxy for energy expenditure, in human participants. We then examine how tag type and placement affect the acceleration signal in birds, using pigeons Columba livia flying in a wind tunnel, with tags mounted simultaneously in two positions, and back‐ and tail‐mounted tags deployed on wild kittiwakes Rissa tridactyla. Finally, we present a case study where two generations of tag were deployed using different attachment procedures on red‐tailed tropicbirds Phaethon rubricauda foraging in different seasons. 3. Bench tests showed that individual acceleration axes required a two‐level correction to eliminate measurement error. This resulted in DBA differences of up to 5% between calibrated and uncalibrated tags for humans walking at a range of speeds. Device position was associated with greater variation in DBA, with upper and lower back‐mounted tags varying by 9% in pigeons, and tail‐ and back‐mounted tags varying by 13% in kittiwakes. The tropicbird study highlighted the difficulties of attributing changes in signal amplitude to a single factor when confounding influences tend to covary, as DBA varied by 25% between seasons. 4. Accelerometer accuracy, tag placement and attachment critically affect the signal amplitude and thereby the ability of the system to detect biologically meaningful phenomena. We propose a simple method to calibrate accelerometers that can be executed under field conditions. This should be used prior to deployments and archived with resulting data. We also suggest a way that researchers can assess accuracy in previously collected data, and caution that variable tag placement and attachment can increase sensor noise and even generate trends that have no biological meaning.
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spelling pubmed-93035932022-07-28 Ecological inference using data from accelerometers needs careful protocols Garde, Baptiste Wilson, Rory P. Fell, Adam Cole, Nik Tatayah, Vikash Holton, Mark D. Rose, Kayleigh A. R. Metcalfe, Richard S. Robotka, Hermina Wikelski, Martin Tremblay, Fred Whelan, Shannon Elliott, Kyle H. Shepard, Emily L. C. Methods Ecol Evol Research Articles 1. Accelerometers in animal‐attached tags are powerful tools in behavioural ecology, they can be used to determine behaviour and provide proxies for movement‐based energy expenditure. Researchers are collecting and archiving data across systems, seasons and device types. However, using data repositories to draw ecological inference requires a good understanding of the error introduced according to sensor type and position on the study animal and protocols for error assessment and minimisation. 2. Using laboratory trials, we examine the absolute accuracy of tri‐axial accelerometers and determine how inaccuracies impact measurements of dynamic body acceleration (DBA), a proxy for energy expenditure, in human participants. We then examine how tag type and placement affect the acceleration signal in birds, using pigeons Columba livia flying in a wind tunnel, with tags mounted simultaneously in two positions, and back‐ and tail‐mounted tags deployed on wild kittiwakes Rissa tridactyla. Finally, we present a case study where two generations of tag were deployed using different attachment procedures on red‐tailed tropicbirds Phaethon rubricauda foraging in different seasons. 3. Bench tests showed that individual acceleration axes required a two‐level correction to eliminate measurement error. This resulted in DBA differences of up to 5% between calibrated and uncalibrated tags for humans walking at a range of speeds. Device position was associated with greater variation in DBA, with upper and lower back‐mounted tags varying by 9% in pigeons, and tail‐ and back‐mounted tags varying by 13% in kittiwakes. The tropicbird study highlighted the difficulties of attributing changes in signal amplitude to a single factor when confounding influences tend to covary, as DBA varied by 25% between seasons. 4. Accelerometer accuracy, tag placement and attachment critically affect the signal amplitude and thereby the ability of the system to detect biologically meaningful phenomena. We propose a simple method to calibrate accelerometers that can be executed under field conditions. This should be used prior to deployments and archived with resulting data. We also suggest a way that researchers can assess accuracy in previously collected data, and caution that variable tag placement and attachment can increase sensor noise and even generate trends that have no biological meaning. John Wiley and Sons Inc. 2022-02-07 2022-04 /pmc/articles/PMC9303593/ /pubmed/35910299 http://dx.doi.org/10.1111/2041-210X.13804 Text en © 2022 The Authors. Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Garde, Baptiste
Wilson, Rory P.
Fell, Adam
Cole, Nik
Tatayah, Vikash
Holton, Mark D.
Rose, Kayleigh A. R.
Metcalfe, Richard S.
Robotka, Hermina
Wikelski, Martin
Tremblay, Fred
Whelan, Shannon
Elliott, Kyle H.
Shepard, Emily L. C.
Ecological inference using data from accelerometers needs careful protocols
title Ecological inference using data from accelerometers needs careful protocols
title_full Ecological inference using data from accelerometers needs careful protocols
title_fullStr Ecological inference using data from accelerometers needs careful protocols
title_full_unstemmed Ecological inference using data from accelerometers needs careful protocols
title_short Ecological inference using data from accelerometers needs careful protocols
title_sort ecological inference using data from accelerometers needs careful protocols
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9303593/
https://www.ncbi.nlm.nih.gov/pubmed/35910299
http://dx.doi.org/10.1111/2041-210X.13804
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