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Biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions

Is it possible to find trends between the parameters that define microbial growth to help us explain the vast microbial diversity? Through an extensive database of kinetic parameters of nitrifiers, we analyzed if the dominance of specific populations of nitrifiers could be predicted and explained. W...

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Autores principales: Martinez‐Rabert, Eloi, Smith, Cindy J., Sloan, William T., González‐Cabaleiro, Rebeca
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9303882/
https://www.ncbi.nlm.nih.gov/pubmed/35092010
http://dx.doi.org/10.1002/bit.28045
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author Martinez‐Rabert, Eloi
Smith, Cindy J.
Sloan, William T.
González‐Cabaleiro, Rebeca
author_facet Martinez‐Rabert, Eloi
Smith, Cindy J.
Sloan, William T.
González‐Cabaleiro, Rebeca
author_sort Martinez‐Rabert, Eloi
collection PubMed
description Is it possible to find trends between the parameters that define microbial growth to help us explain the vast microbial diversity? Through an extensive database of kinetic parameters of nitrifiers, we analyzed if the dominance of specific populations of nitrifiers could be predicted and explained. We concluded that, in general, higher growth yield (Y(XS)) and ammonia affinity (a(0) (NH3)) and lower growth rate (µ(max)) are observed for ammonia‐oxidizing archaea (AOA) than bacteria (AOB), which would explain their considered dominance in oligotrophic environments. However, comammox (CMX), with the maximum energy harvest per mole of ammonia, and some AOB, have higher a(0) (NH3) and lower µ(max) than some AOA. Although we were able to correlate the presence of specific terminal oxidases with observed oxygen affinities (a(0) (O2)) for nitrite‐oxidizing bacteria (NOB), that correlation was not observed for AOB. Moreover, the presumed dominance of AOB over NOB in O(2)‐limiting environments is discussed. Additionally, lower statistical variance of a(0) (O2) values than for ammonia and nitrite affinities was observed, suggesting nitrogen limitation as a stronger selective pressure. Overall, specific growth strategies within nitrifying groups were not identified through the reported kinetic parameters, which might suggest that mostly, fundamental differences in biochemistry are responsible for underlying kinetic parameters.
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spelling pubmed-93038822022-07-28 Biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions Martinez‐Rabert, Eloi Smith, Cindy J. Sloan, William T. González‐Cabaleiro, Rebeca Biotechnol Bioeng ARTICLES Is it possible to find trends between the parameters that define microbial growth to help us explain the vast microbial diversity? Through an extensive database of kinetic parameters of nitrifiers, we analyzed if the dominance of specific populations of nitrifiers could be predicted and explained. We concluded that, in general, higher growth yield (Y(XS)) and ammonia affinity (a(0) (NH3)) and lower growth rate (µ(max)) are observed for ammonia‐oxidizing archaea (AOA) than bacteria (AOB), which would explain their considered dominance in oligotrophic environments. However, comammox (CMX), with the maximum energy harvest per mole of ammonia, and some AOB, have higher a(0) (NH3) and lower µ(max) than some AOA. Although we were able to correlate the presence of specific terminal oxidases with observed oxygen affinities (a(0) (O2)) for nitrite‐oxidizing bacteria (NOB), that correlation was not observed for AOB. Moreover, the presumed dominance of AOB over NOB in O(2)‐limiting environments is discussed. Additionally, lower statistical variance of a(0) (O2) values than for ammonia and nitrite affinities was observed, suggesting nitrogen limitation as a stronger selective pressure. Overall, specific growth strategies within nitrifying groups were not identified through the reported kinetic parameters, which might suggest that mostly, fundamental differences in biochemistry are responsible for underlying kinetic parameters. John Wiley and Sons Inc. 2022-02-11 2022-05 /pmc/articles/PMC9303882/ /pubmed/35092010 http://dx.doi.org/10.1002/bit.28045 Text en © 2022 The Authors. Biotechnology and Bioengineering published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle ARTICLES
Martinez‐Rabert, Eloi
Smith, Cindy J.
Sloan, William T.
González‐Cabaleiro, Rebeca
Biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions
title Biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions
title_full Biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions
title_fullStr Biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions
title_full_unstemmed Biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions
title_short Biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions
title_sort biochemistry shapes growth kinetics of nitrifiers and defines their activity under specific environmental conditions
topic ARTICLES
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9303882/
https://www.ncbi.nlm.nih.gov/pubmed/35092010
http://dx.doi.org/10.1002/bit.28045
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