Cargando…

The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study

5‐Formylcytosine is an important nucleobase in epigenetic regulation, whose hydrate form has been implicated in the formation of 5‐carboxycytosine as well as oligonucleotide binding events. The hydrate content of 5‐formylcytosine and its uracil derivative has now been quantified using a combination...

Descripción completa

Detalles Bibliográficos
Autores principales: Zott, Fabian L., Korotenko, Vasily, Zipse, Hendrik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9304204/
https://www.ncbi.nlm.nih.gov/pubmed/35084086
http://dx.doi.org/10.1002/cbic.202100651
_version_ 1784752050158960640
author Zott, Fabian L.
Korotenko, Vasily
Zipse, Hendrik
author_facet Zott, Fabian L.
Korotenko, Vasily
Zipse, Hendrik
author_sort Zott, Fabian L.
collection PubMed
description 5‐Formylcytosine is an important nucleobase in epigenetic regulation, whose hydrate form has been implicated in the formation of 5‐carboxycytosine as well as oligonucleotide binding events. The hydrate content of 5‐formylcytosine and its uracil derivative has now been quantified using a combination of NMR and mass spectroscopic measurements as well as theoretical studies. Small amounts of hydrate can be identified for the protonated form of 5‐formylcytosine and for neutral 5‐formyluracil. For neutral 5‐formylcytosine, however, direct detection of the hydrate was not possible due to its very low abundance. This is in full agreement with theoretical estimates.
format Online
Article
Text
id pubmed-9304204
institution National Center for Biotechnology Information
language English
publishDate 2022
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-93042042022-07-28 The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study Zott, Fabian L. Korotenko, Vasily Zipse, Hendrik Chembiochem Research Articles 5‐Formylcytosine is an important nucleobase in epigenetic regulation, whose hydrate form has been implicated in the formation of 5‐carboxycytosine as well as oligonucleotide binding events. The hydrate content of 5‐formylcytosine and its uracil derivative has now been quantified using a combination of NMR and mass spectroscopic measurements as well as theoretical studies. Small amounts of hydrate can be identified for the protonated form of 5‐formylcytosine and for neutral 5‐formyluracil. For neutral 5‐formylcytosine, however, direct detection of the hydrate was not possible due to its very low abundance. This is in full agreement with theoretical estimates. John Wiley and Sons Inc. 2022-02-10 2022-04-05 /pmc/articles/PMC9304204/ /pubmed/35084086 http://dx.doi.org/10.1002/cbic.202100651 Text en © 2022 The Authors. ChemBioChem published by Wiley-VCH GmbH https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Research Articles
Zott, Fabian L.
Korotenko, Vasily
Zipse, Hendrik
The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study
title The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study
title_full The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study
title_fullStr The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study
title_full_unstemmed The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study
title_short The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study
title_sort ph‐dependence of the hydration of 5‐formylcytosine: an experimental and theoretical study
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9304204/
https://www.ncbi.nlm.nih.gov/pubmed/35084086
http://dx.doi.org/10.1002/cbic.202100651
work_keys_str_mv AT zottfabianl thephdependenceofthehydrationof5formylcytosineanexperimentalandtheoreticalstudy
AT korotenkovasily thephdependenceofthehydrationof5formylcytosineanexperimentalandtheoreticalstudy
AT zipsehendrik thephdependenceofthehydrationof5formylcytosineanexperimentalandtheoreticalstudy
AT zottfabianl phdependenceofthehydrationof5formylcytosineanexperimentalandtheoreticalstudy
AT korotenkovasily phdependenceofthehydrationof5formylcytosineanexperimentalandtheoreticalstudy
AT zipsehendrik phdependenceofthehydrationof5formylcytosineanexperimentalandtheoreticalstudy