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The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study
5‐Formylcytosine is an important nucleobase in epigenetic regulation, whose hydrate form has been implicated in the formation of 5‐carboxycytosine as well as oligonucleotide binding events. The hydrate content of 5‐formylcytosine and its uracil derivative has now been quantified using a combination...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9304204/ https://www.ncbi.nlm.nih.gov/pubmed/35084086 http://dx.doi.org/10.1002/cbic.202100651 |
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author | Zott, Fabian L. Korotenko, Vasily Zipse, Hendrik |
author_facet | Zott, Fabian L. Korotenko, Vasily Zipse, Hendrik |
author_sort | Zott, Fabian L. |
collection | PubMed |
description | 5‐Formylcytosine is an important nucleobase in epigenetic regulation, whose hydrate form has been implicated in the formation of 5‐carboxycytosine as well as oligonucleotide binding events. The hydrate content of 5‐formylcytosine and its uracil derivative has now been quantified using a combination of NMR and mass spectroscopic measurements as well as theoretical studies. Small amounts of hydrate can be identified for the protonated form of 5‐formylcytosine and for neutral 5‐formyluracil. For neutral 5‐formylcytosine, however, direct detection of the hydrate was not possible due to its very low abundance. This is in full agreement with theoretical estimates. |
format | Online Article Text |
id | pubmed-9304204 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93042042022-07-28 The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study Zott, Fabian L. Korotenko, Vasily Zipse, Hendrik Chembiochem Research Articles 5‐Formylcytosine is an important nucleobase in epigenetic regulation, whose hydrate form has been implicated in the formation of 5‐carboxycytosine as well as oligonucleotide binding events. The hydrate content of 5‐formylcytosine and its uracil derivative has now been quantified using a combination of NMR and mass spectroscopic measurements as well as theoretical studies. Small amounts of hydrate can be identified for the protonated form of 5‐formylcytosine and for neutral 5‐formyluracil. For neutral 5‐formylcytosine, however, direct detection of the hydrate was not possible due to its very low abundance. This is in full agreement with theoretical estimates. John Wiley and Sons Inc. 2022-02-10 2022-04-05 /pmc/articles/PMC9304204/ /pubmed/35084086 http://dx.doi.org/10.1002/cbic.202100651 Text en © 2022 The Authors. ChemBioChem published by Wiley-VCH GmbH https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Research Articles Zott, Fabian L. Korotenko, Vasily Zipse, Hendrik The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study |
title | The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study |
title_full | The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study |
title_fullStr | The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study |
title_full_unstemmed | The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study |
title_short | The pH‐Dependence of the Hydration of 5‐Formylcytosine: an Experimental and Theoretical Study |
title_sort | ph‐dependence of the hydration of 5‐formylcytosine: an experimental and theoretical study |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9304204/ https://www.ncbi.nlm.nih.gov/pubmed/35084086 http://dx.doi.org/10.1002/cbic.202100651 |
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