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Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration
Functional magnetic resonance imaging (fMRI) is a non‐invasive technique that facilitates the study of brain activity by measuring changes in blood flow. Brain activity signals can be recorded during the alternate performance of given tasks, that is, task fMRI (tfMRI), or during resting‐state, that...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9305951/ https://www.ncbi.nlm.nih.gov/pubmed/35118686 http://dx.doi.org/10.1002/sim.9342 |
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author | Alemán‐Gómez, Yasser Arribas‐Gil, Ana Desco, Manuel Elías, Antonio Romo, Juan |
author_facet | Alemán‐Gómez, Yasser Arribas‐Gil, Ana Desco, Manuel Elías, Antonio Romo, Juan |
author_sort | Alemán‐Gómez, Yasser |
collection | PubMed |
description | Functional magnetic resonance imaging (fMRI) is a non‐invasive technique that facilitates the study of brain activity by measuring changes in blood flow. Brain activity signals can be recorded during the alternate performance of given tasks, that is, task fMRI (tfMRI), or during resting‐state, that is, resting‐state fMRI (rsfMRI), as a measure of baseline brain activity. This contributes to the understanding of how the human brain is organized in functionally distinct subdivisions. fMRI experiments from high‐resolution scans provide hundred of thousands of longitudinal signals for each individual, corresponding to brain activity measurements over each voxel of the brain along the duration of the experiment. In this context, we propose novel visualization techniques for high‐dimensional functional data relying on depth‐based notions that enable computationally efficient 2‐dim representations of fMRI data, which elucidate sample composition, outlier presence, and individual variability. We believe that this previous step is crucial to any inferential approach willing to identify neuroscientific patterns across individuals, tasks, and brain regions. We present the proposed technique via an extensive simulation study, and demonstrate its application on a motor and language tfMRI experiment. |
format | Online Article Text |
id | pubmed-9305951 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-93059512022-07-28 Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration Alemán‐Gómez, Yasser Arribas‐Gil, Ana Desco, Manuel Elías, Antonio Romo, Juan Stat Med Research Articles Functional magnetic resonance imaging (fMRI) is a non‐invasive technique that facilitates the study of brain activity by measuring changes in blood flow. Brain activity signals can be recorded during the alternate performance of given tasks, that is, task fMRI (tfMRI), or during resting‐state, that is, resting‐state fMRI (rsfMRI), as a measure of baseline brain activity. This contributes to the understanding of how the human brain is organized in functionally distinct subdivisions. fMRI experiments from high‐resolution scans provide hundred of thousands of longitudinal signals for each individual, corresponding to brain activity measurements over each voxel of the brain along the duration of the experiment. In this context, we propose novel visualization techniques for high‐dimensional functional data relying on depth‐based notions that enable computationally efficient 2‐dim representations of fMRI data, which elucidate sample composition, outlier presence, and individual variability. We believe that this previous step is crucial to any inferential approach willing to identify neuroscientific patterns across individuals, tasks, and brain regions. We present the proposed technique via an extensive simulation study, and demonstrate its application on a motor and language tfMRI experiment. John Wiley and Sons Inc. 2022-02-03 2022-05-20 /pmc/articles/PMC9305951/ /pubmed/35118686 http://dx.doi.org/10.1002/sim.9342 Text en © 2022 The Authors. Statistics in Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Research Articles Alemán‐Gómez, Yasser Arribas‐Gil, Ana Desco, Manuel Elías, Antonio Romo, Juan Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration |
title | Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration |
title_full | Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration |
title_fullStr | Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration |
title_full_unstemmed | Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration |
title_short | Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration |
title_sort | depthgram: visualizing outliers in high‐dimensional functional data with application to fmri data exploration |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9305951/ https://www.ncbi.nlm.nih.gov/pubmed/35118686 http://dx.doi.org/10.1002/sim.9342 |
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