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Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration

Functional magnetic resonance imaging (fMRI) is a non‐invasive technique that facilitates the study of brain activity by measuring changes in blood flow. Brain activity signals can be recorded during the alternate performance of given tasks, that is, task fMRI (tfMRI), or during resting‐state, that...

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Autores principales: Alemán‐Gómez, Yasser, Arribas‐Gil, Ana, Desco, Manuel, Elías, Antonio, Romo, Juan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9305951/
https://www.ncbi.nlm.nih.gov/pubmed/35118686
http://dx.doi.org/10.1002/sim.9342
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author Alemán‐Gómez, Yasser
Arribas‐Gil, Ana
Desco, Manuel
Elías, Antonio
Romo, Juan
author_facet Alemán‐Gómez, Yasser
Arribas‐Gil, Ana
Desco, Manuel
Elías, Antonio
Romo, Juan
author_sort Alemán‐Gómez, Yasser
collection PubMed
description Functional magnetic resonance imaging (fMRI) is a non‐invasive technique that facilitates the study of brain activity by measuring changes in blood flow. Brain activity signals can be recorded during the alternate performance of given tasks, that is, task fMRI (tfMRI), or during resting‐state, that is, resting‐state fMRI (rsfMRI), as a measure of baseline brain activity. This contributes to the understanding of how the human brain is organized in functionally distinct subdivisions. fMRI experiments from high‐resolution scans provide hundred of thousands of longitudinal signals for each individual, corresponding to brain activity measurements over each voxel of the brain along the duration of the experiment. In this context, we propose novel visualization techniques for high‐dimensional functional data relying on depth‐based notions that enable computationally efficient 2‐dim representations of fMRI data, which elucidate sample composition, outlier presence, and individual variability. We believe that this previous step is crucial to any inferential approach willing to identify neuroscientific patterns across individuals, tasks, and brain regions. We present the proposed technique via an extensive simulation study, and demonstrate its application on a motor and language tfMRI experiment.
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spelling pubmed-93059512022-07-28 Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration Alemán‐Gómez, Yasser Arribas‐Gil, Ana Desco, Manuel Elías, Antonio Romo, Juan Stat Med Research Articles Functional magnetic resonance imaging (fMRI) is a non‐invasive technique that facilitates the study of brain activity by measuring changes in blood flow. Brain activity signals can be recorded during the alternate performance of given tasks, that is, task fMRI (tfMRI), or during resting‐state, that is, resting‐state fMRI (rsfMRI), as a measure of baseline brain activity. This contributes to the understanding of how the human brain is organized in functionally distinct subdivisions. fMRI experiments from high‐resolution scans provide hundred of thousands of longitudinal signals for each individual, corresponding to brain activity measurements over each voxel of the brain along the duration of the experiment. In this context, we propose novel visualization techniques for high‐dimensional functional data relying on depth‐based notions that enable computationally efficient 2‐dim representations of fMRI data, which elucidate sample composition, outlier presence, and individual variability. We believe that this previous step is crucial to any inferential approach willing to identify neuroscientific patterns across individuals, tasks, and brain regions. We present the proposed technique via an extensive simulation study, and demonstrate its application on a motor and language tfMRI experiment. John Wiley and Sons Inc. 2022-02-03 2022-05-20 /pmc/articles/PMC9305951/ /pubmed/35118686 http://dx.doi.org/10.1002/sim.9342 Text en © 2022 The Authors. Statistics in Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Research Articles
Alemán‐Gómez, Yasser
Arribas‐Gil, Ana
Desco, Manuel
Elías, Antonio
Romo, Juan
Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration
title Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration
title_full Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration
title_fullStr Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration
title_full_unstemmed Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration
title_short Depthgram: Visualizing outliers in high‐dimensional functional data with application to fMRI data exploration
title_sort depthgram: visualizing outliers in high‐dimensional functional data with application to fmri data exploration
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9305951/
https://www.ncbi.nlm.nih.gov/pubmed/35118686
http://dx.doi.org/10.1002/sim.9342
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