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Expert tumor annotations and radiomics for locally advanced breast cancer in DCE-MRI for ACRIN 6657/I-SPY1
Breast cancer is one of the most pervasive forms of cancer and its inherent intra- and inter-tumor heterogeneity contributes towards its poor prognosis. Multiple studies have reported results from either private institutional data or publicly available datasets. However, current public datasets are...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9308769/ https://www.ncbi.nlm.nih.gov/pubmed/35871247 http://dx.doi.org/10.1038/s41597-022-01555-4 |
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author | Chitalia, Rhea Pati, Sarthak Bhalerao, Megh Thakur, Siddhesh Pravin Jahani, Nariman Belenky, Vivian McDonald, Elizabeth S. Gibbs, Jessica Newitt, David C. Hylton, Nola M. Kontos, Despina Bakas, Spyridon |
author_facet | Chitalia, Rhea Pati, Sarthak Bhalerao, Megh Thakur, Siddhesh Pravin Jahani, Nariman Belenky, Vivian McDonald, Elizabeth S. Gibbs, Jessica Newitt, David C. Hylton, Nola M. Kontos, Despina Bakas, Spyridon |
author_sort | Chitalia, Rhea |
collection | PubMed |
description | Breast cancer is one of the most pervasive forms of cancer and its inherent intra- and inter-tumor heterogeneity contributes towards its poor prognosis. Multiple studies have reported results from either private institutional data or publicly available datasets. However, current public datasets are limited in terms of having consistency in: a) data quality, b) quality of expert annotation of pathology, and c) availability of baseline results from computational algorithms. To address these limitations, here we propose the enhancement of the I-SPY1 data collection, with uniformly curated data, tumor annotations, and quantitative imaging features. Specifically, the proposed dataset includes a) uniformly processed scans that are harmonized to match intensity and spatial characteristics, facilitating immediate use in computational studies, b) computationally-generated and manually-revised expert annotations of tumor regions, as well as c) a comprehensive set of quantitative imaging (also known as radiomic) features corresponding to the tumor regions. This collection describes our contribution towards repeatable, reproducible, and comparative quantitative studies leading to new predictive, prognostic, and diagnostic assessments. |
format | Online Article Text |
id | pubmed-9308769 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-93087692022-07-25 Expert tumor annotations and radiomics for locally advanced breast cancer in DCE-MRI for ACRIN 6657/I-SPY1 Chitalia, Rhea Pati, Sarthak Bhalerao, Megh Thakur, Siddhesh Pravin Jahani, Nariman Belenky, Vivian McDonald, Elizabeth S. Gibbs, Jessica Newitt, David C. Hylton, Nola M. Kontos, Despina Bakas, Spyridon Sci Data Data Descriptor Breast cancer is one of the most pervasive forms of cancer and its inherent intra- and inter-tumor heterogeneity contributes towards its poor prognosis. Multiple studies have reported results from either private institutional data or publicly available datasets. However, current public datasets are limited in terms of having consistency in: a) data quality, b) quality of expert annotation of pathology, and c) availability of baseline results from computational algorithms. To address these limitations, here we propose the enhancement of the I-SPY1 data collection, with uniformly curated data, tumor annotations, and quantitative imaging features. Specifically, the proposed dataset includes a) uniformly processed scans that are harmonized to match intensity and spatial characteristics, facilitating immediate use in computational studies, b) computationally-generated and manually-revised expert annotations of tumor regions, as well as c) a comprehensive set of quantitative imaging (also known as radiomic) features corresponding to the tumor regions. This collection describes our contribution towards repeatable, reproducible, and comparative quantitative studies leading to new predictive, prognostic, and diagnostic assessments. Nature Publishing Group UK 2022-07-23 /pmc/articles/PMC9308769/ /pubmed/35871247 http://dx.doi.org/10.1038/s41597-022-01555-4 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Chitalia, Rhea Pati, Sarthak Bhalerao, Megh Thakur, Siddhesh Pravin Jahani, Nariman Belenky, Vivian McDonald, Elizabeth S. Gibbs, Jessica Newitt, David C. Hylton, Nola M. Kontos, Despina Bakas, Spyridon Expert tumor annotations and radiomics for locally advanced breast cancer in DCE-MRI for ACRIN 6657/I-SPY1 |
title | Expert tumor annotations and radiomics for locally advanced breast cancer in DCE-MRI for ACRIN 6657/I-SPY1 |
title_full | Expert tumor annotations and radiomics for locally advanced breast cancer in DCE-MRI for ACRIN 6657/I-SPY1 |
title_fullStr | Expert tumor annotations and radiomics for locally advanced breast cancer in DCE-MRI for ACRIN 6657/I-SPY1 |
title_full_unstemmed | Expert tumor annotations and radiomics for locally advanced breast cancer in DCE-MRI for ACRIN 6657/I-SPY1 |
title_short | Expert tumor annotations and radiomics for locally advanced breast cancer in DCE-MRI for ACRIN 6657/I-SPY1 |
title_sort | expert tumor annotations and radiomics for locally advanced breast cancer in dce-mri for acrin 6657/i-spy1 |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9308769/ https://www.ncbi.nlm.nih.gov/pubmed/35871247 http://dx.doi.org/10.1038/s41597-022-01555-4 |
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