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Predicting suitable habitats of Melia azedarach L. in China using data mining

Melia azedarach L. is an important economic tree widely distributed in tropical and subtropical regions of China and some other countries. However, it is unclear how the species’ suitable habitat will respond to future climate changes. We aimed to select the most accurate one among seven data mining...

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Autores principales: Feng, Lei, Tian, Xiangni, El-Kassaby, Yousry A., Qiu, Jian, Feng, Ze, Sun, Jiejie, Wang, Guibin, Wang, Tongli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9308798/
https://www.ncbi.nlm.nih.gov/pubmed/35871227
http://dx.doi.org/10.1038/s41598-022-16571-y
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author Feng, Lei
Tian, Xiangni
El-Kassaby, Yousry A.
Qiu, Jian
Feng, Ze
Sun, Jiejie
Wang, Guibin
Wang, Tongli
author_facet Feng, Lei
Tian, Xiangni
El-Kassaby, Yousry A.
Qiu, Jian
Feng, Ze
Sun, Jiejie
Wang, Guibin
Wang, Tongli
author_sort Feng, Lei
collection PubMed
description Melia azedarach L. is an important economic tree widely distributed in tropical and subtropical regions of China and some other countries. However, it is unclear how the species’ suitable habitat will respond to future climate changes. We aimed to select the most accurate one among seven data mining models to predict the current and future suitable habitats for M. azedarach in China. These models include: maximum entropy (MaxEnt), support vector machine (SVM), generalized linear model (GLM), random forest (RF), naive bayesian model (NBM), extreme gradient boosting (XGBoost), and gradient boosting machine (GBM). A total of 906 M. azedarach locations were identified, and sixteen climate predictors were used for model building. The models’ validity was assessed using three measures (Area Under the Curves (AUC), kappa, and overall accuracy (OA)). We found that the RF provided the most outstanding performance in prediction power and generalization capacity. The top climate factors affecting the species’ suitable habitats were mean coldest month temperature (MCMT), followed by the number of frost-free days (NFFD), degree-days above 18 °C (DD > 18), temperature difference between MWMT and MCMT, or continentality (TD), mean annual precipitation (MAP), and degree-days below 18 °C (DD < 18). We projected that future suitable habitat of this species would increase under both the RCP4.5 and RCP8.5 scenarios for the 2011–2040 (2020s), 2041–2070 (2050s), and 2071–2100 (2080s). Our findings are expected to assist in better understanding the impact of climate change on the species and provide scientific basis for its planting and conservation.
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spelling pubmed-93087982022-07-25 Predicting suitable habitats of Melia azedarach L. in China using data mining Feng, Lei Tian, Xiangni El-Kassaby, Yousry A. Qiu, Jian Feng, Ze Sun, Jiejie Wang, Guibin Wang, Tongli Sci Rep Article Melia azedarach L. is an important economic tree widely distributed in tropical and subtropical regions of China and some other countries. However, it is unclear how the species’ suitable habitat will respond to future climate changes. We aimed to select the most accurate one among seven data mining models to predict the current and future suitable habitats for M. azedarach in China. These models include: maximum entropy (MaxEnt), support vector machine (SVM), generalized linear model (GLM), random forest (RF), naive bayesian model (NBM), extreme gradient boosting (XGBoost), and gradient boosting machine (GBM). A total of 906 M. azedarach locations were identified, and sixteen climate predictors were used for model building. The models’ validity was assessed using three measures (Area Under the Curves (AUC), kappa, and overall accuracy (OA)). We found that the RF provided the most outstanding performance in prediction power and generalization capacity. The top climate factors affecting the species’ suitable habitats were mean coldest month temperature (MCMT), followed by the number of frost-free days (NFFD), degree-days above 18 °C (DD > 18), temperature difference between MWMT and MCMT, or continentality (TD), mean annual precipitation (MAP), and degree-days below 18 °C (DD < 18). We projected that future suitable habitat of this species would increase under both the RCP4.5 and RCP8.5 scenarios for the 2011–2040 (2020s), 2041–2070 (2050s), and 2071–2100 (2080s). Our findings are expected to assist in better understanding the impact of climate change on the species and provide scientific basis for its planting and conservation. Nature Publishing Group UK 2022-07-23 /pmc/articles/PMC9308798/ /pubmed/35871227 http://dx.doi.org/10.1038/s41598-022-16571-y Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Feng, Lei
Tian, Xiangni
El-Kassaby, Yousry A.
Qiu, Jian
Feng, Ze
Sun, Jiejie
Wang, Guibin
Wang, Tongli
Predicting suitable habitats of Melia azedarach L. in China using data mining
title Predicting suitable habitats of Melia azedarach L. in China using data mining
title_full Predicting suitable habitats of Melia azedarach L. in China using data mining
title_fullStr Predicting suitable habitats of Melia azedarach L. in China using data mining
title_full_unstemmed Predicting suitable habitats of Melia azedarach L. in China using data mining
title_short Predicting suitable habitats of Melia azedarach L. in China using data mining
title_sort predicting suitable habitats of melia azedarach l. in china using data mining
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9308798/
https://www.ncbi.nlm.nih.gov/pubmed/35871227
http://dx.doi.org/10.1038/s41598-022-16571-y
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