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First insights into the rhizospheric bacterial abundance data of Ceriops tagal (Perr.) C.B.Rob. from Indian Sundarbans
This article reports the analyses of the rhizospheric microbiome of the terrestrial mangrove Ceriops tagal (Perr.) C.B.Rob. from the Indian Sundarbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the bacterial communiti...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9309684/ https://www.ncbi.nlm.nih.gov/pubmed/35898864 http://dx.doi.org/10.1016/j.dib.2022.108468 |
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author | Dhar, Gaurab Aditya Ganguli, Sayak Mallick, Bidisha |
author_facet | Dhar, Gaurab Aditya Ganguli, Sayak Mallick, Bidisha |
author_sort | Dhar, Gaurab Aditya |
collection | PubMed |
description | This article reports the analyses of the rhizospheric microbiome of the terrestrial mangrove Ceriops tagal (Perr.) C.B.Rob. from the Indian Sundarbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the bacterial communities prevalent in the rhizosphere. A total of 1,74,324 quality checked reads were assembled into contigs and were analyzed using QIIME2 and MetaG server to reveal the abundance of Proteobacteria, Bacteroidetes and Actinobacteria. The data is available at the NCBI - Sequence Read Archive with accession number: SRR15652592. This is the first report of the rhizospheric microbiome belonging to this plant from the Indian Sundarbans. |
format | Online Article Text |
id | pubmed-9309684 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-93096842022-07-26 First insights into the rhizospheric bacterial abundance data of Ceriops tagal (Perr.) C.B.Rob. from Indian Sundarbans Dhar, Gaurab Aditya Ganguli, Sayak Mallick, Bidisha Data Brief Data Article This article reports the analyses of the rhizospheric microbiome of the terrestrial mangrove Ceriops tagal (Perr.) C.B.Rob. from the Indian Sundarbans. Samples were collected using standard protocols and 16S rRNA gene V3–V4 region amplicon sequencing was performed to identify the bacterial communities prevalent in the rhizosphere. A total of 1,74,324 quality checked reads were assembled into contigs and were analyzed using QIIME2 and MetaG server to reveal the abundance of Proteobacteria, Bacteroidetes and Actinobacteria. The data is available at the NCBI - Sequence Read Archive with accession number: SRR15652592. This is the first report of the rhizospheric microbiome belonging to this plant from the Indian Sundarbans. Elsevier 2022-07-14 /pmc/articles/PMC9309684/ /pubmed/35898864 http://dx.doi.org/10.1016/j.dib.2022.108468 Text en © 2022 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Dhar, Gaurab Aditya Ganguli, Sayak Mallick, Bidisha First insights into the rhizospheric bacterial abundance data of Ceriops tagal (Perr.) C.B.Rob. from Indian Sundarbans |
title | First insights into the rhizospheric bacterial abundance data of Ceriops tagal (Perr.) C.B.Rob. from Indian Sundarbans |
title_full | First insights into the rhizospheric bacterial abundance data of Ceriops tagal (Perr.) C.B.Rob. from Indian Sundarbans |
title_fullStr | First insights into the rhizospheric bacterial abundance data of Ceriops tagal (Perr.) C.B.Rob. from Indian Sundarbans |
title_full_unstemmed | First insights into the rhizospheric bacterial abundance data of Ceriops tagal (Perr.) C.B.Rob. from Indian Sundarbans |
title_short | First insights into the rhizospheric bacterial abundance data of Ceriops tagal (Perr.) C.B.Rob. from Indian Sundarbans |
title_sort | first insights into the rhizospheric bacterial abundance data of ceriops tagal (perr.) c.b.rob. from indian sundarbans |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9309684/ https://www.ncbi.nlm.nih.gov/pubmed/35898864 http://dx.doi.org/10.1016/j.dib.2022.108468 |
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