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A novel immune checkpoints-based signature to predict prognosis and response to immunotherapy in lung adenocarcinoma

BACKGROUND: Except for B7-CD28 family members, more novel immune checkpoints are being discovered. They are closely associated with tumor immune microenvironment and regulate the function of many immune cells. Various cancer therapeutic studies targeting these novel immune checkpoints are currently...

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Autores principales: Sun, Nan, Luo, Yuejun, Zheng, Bo, Zhang, Zhihui, Zhang, Chaoqi, Zhang, Zhen, Zhang, Guochao, Tan, Fengwei, Xue, Qi, Gao, Shugeng, He, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9310422/
https://www.ncbi.nlm.nih.gov/pubmed/35879761
http://dx.doi.org/10.1186/s12967-022-03520-6
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author Sun, Nan
Luo, Yuejun
Zheng, Bo
Zhang, Zhihui
Zhang, Chaoqi
Zhang, Zhen
Zhang, Guochao
Tan, Fengwei
Xue, Qi
Gao, Shugeng
He, Jie
author_facet Sun, Nan
Luo, Yuejun
Zheng, Bo
Zhang, Zhihui
Zhang, Chaoqi
Zhang, Zhen
Zhang, Guochao
Tan, Fengwei
Xue, Qi
Gao, Shugeng
He, Jie
author_sort Sun, Nan
collection PubMed
description BACKGROUND: Except for B7-CD28 family members, more novel immune checkpoints are being discovered. They are closely associated with tumor immune microenvironment and regulate the function of many immune cells. Various cancer therapeutic studies targeting these novel immune checkpoints are currently in full swing. However, studies concerning novel immune checkpoints phenotypes and clinical significance in lung adenocarcinoma (LUAD) are still limited. METHODS: We enrolled 1883 LUAD cases from nine different cohorts. The samples from The Cancer Genome Atlas (TCGA) were used as a training set, whereas seven microarray data cohorts and an independent cohort with 102 qPCR data were used for validation. The immune profiles and potential mechanism of the system were also explored. RESULTS: After univariate Cox proportional hazards regression and stepwise multivariable Cox analysis, a novel immune checkpoints-based system (LTA, CD160, and CD40LG) were identified from the training set, which significantly stratified patients into high- and low-risk groups with different survivals. Furthermore, this system has been well validated in different clinical subgroups and multiple validation cohorts. It also acted as an independent prognostic factor for patients with LAUD in different cohorts. Further exploration suggested that high-risk patients exhibited distinctive immune cells infiltration and suffered an immunosuppressive state. Additionally, this system is closely linked to various classical immunotherapy biomarkers. CONCLUSION: we constructed a novel immune checkpoints-based system for LUAD, which predicts prognosis and immunotherapeutic implications. We believe that these findings will not only aid in clinical management but will also shed some light on screening appropriate patients for immunotherapy. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12967-022-03520-6.
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spelling pubmed-93104222022-07-26 A novel immune checkpoints-based signature to predict prognosis and response to immunotherapy in lung adenocarcinoma Sun, Nan Luo, Yuejun Zheng, Bo Zhang, Zhihui Zhang, Chaoqi Zhang, Zhen Zhang, Guochao Tan, Fengwei Xue, Qi Gao, Shugeng He, Jie J Transl Med Research BACKGROUND: Except for B7-CD28 family members, more novel immune checkpoints are being discovered. They are closely associated with tumor immune microenvironment and regulate the function of many immune cells. Various cancer therapeutic studies targeting these novel immune checkpoints are currently in full swing. However, studies concerning novel immune checkpoints phenotypes and clinical significance in lung adenocarcinoma (LUAD) are still limited. METHODS: We enrolled 1883 LUAD cases from nine different cohorts. The samples from The Cancer Genome Atlas (TCGA) were used as a training set, whereas seven microarray data cohorts and an independent cohort with 102 qPCR data were used for validation. The immune profiles and potential mechanism of the system were also explored. RESULTS: After univariate Cox proportional hazards regression and stepwise multivariable Cox analysis, a novel immune checkpoints-based system (LTA, CD160, and CD40LG) were identified from the training set, which significantly stratified patients into high- and low-risk groups with different survivals. Furthermore, this system has been well validated in different clinical subgroups and multiple validation cohorts. It also acted as an independent prognostic factor for patients with LAUD in different cohorts. Further exploration suggested that high-risk patients exhibited distinctive immune cells infiltration and suffered an immunosuppressive state. Additionally, this system is closely linked to various classical immunotherapy biomarkers. CONCLUSION: we constructed a novel immune checkpoints-based system for LUAD, which predicts prognosis and immunotherapeutic implications. We believe that these findings will not only aid in clinical management but will also shed some light on screening appropriate patients for immunotherapy. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12967-022-03520-6. BioMed Central 2022-07-25 /pmc/articles/PMC9310422/ /pubmed/35879761 http://dx.doi.org/10.1186/s12967-022-03520-6 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Research
Sun, Nan
Luo, Yuejun
Zheng, Bo
Zhang, Zhihui
Zhang, Chaoqi
Zhang, Zhen
Zhang, Guochao
Tan, Fengwei
Xue, Qi
Gao, Shugeng
He, Jie
A novel immune checkpoints-based signature to predict prognosis and response to immunotherapy in lung adenocarcinoma
title A novel immune checkpoints-based signature to predict prognosis and response to immunotherapy in lung adenocarcinoma
title_full A novel immune checkpoints-based signature to predict prognosis and response to immunotherapy in lung adenocarcinoma
title_fullStr A novel immune checkpoints-based signature to predict prognosis and response to immunotherapy in lung adenocarcinoma
title_full_unstemmed A novel immune checkpoints-based signature to predict prognosis and response to immunotherapy in lung adenocarcinoma
title_short A novel immune checkpoints-based signature to predict prognosis and response to immunotherapy in lung adenocarcinoma
title_sort novel immune checkpoints-based signature to predict prognosis and response to immunotherapy in lung adenocarcinoma
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9310422/
https://www.ncbi.nlm.nih.gov/pubmed/35879761
http://dx.doi.org/10.1186/s12967-022-03520-6
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