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INSIDEnet: Interpretable NonexpanSIve Data‐Efficient network for denoising in grating interferometry breast CT

PURPOSE: Breast cancer is the most common malignancy in women. Unfortunately, current breast imaging techniques all suffer from certain limitations: they are either not fully three dimensional, have an insufficient resolution or low soft‐tissue contrast. Grating interferometry breast computed tomogr...

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Autores principales: van Gogh, Stefano, Wang, Zhentian, Rawlik, Michał, Etmann, Christian, Mukherjee, Subhadip, Schönlieb, Carola‐Bibiane, Angst, Florian, Boss, Andreas, Stampanoni, Marco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9311686/
https://www.ncbi.nlm.nih.gov/pubmed/35257395
http://dx.doi.org/10.1002/mp.15595
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author van Gogh, Stefano
Wang, Zhentian
Rawlik, Michał
Etmann, Christian
Mukherjee, Subhadip
Schönlieb, Carola‐Bibiane
Angst, Florian
Boss, Andreas
Stampanoni, Marco
author_facet van Gogh, Stefano
Wang, Zhentian
Rawlik, Michał
Etmann, Christian
Mukherjee, Subhadip
Schönlieb, Carola‐Bibiane
Angst, Florian
Boss, Andreas
Stampanoni, Marco
author_sort van Gogh, Stefano
collection PubMed
description PURPOSE: Breast cancer is the most common malignancy in women. Unfortunately, current breast imaging techniques all suffer from certain limitations: they are either not fully three dimensional, have an insufficient resolution or low soft‐tissue contrast. Grating interferometry breast computed tomography (GI‐BCT) is a promising X‐ray phase contrast modality that could overcome these limitations by offering high soft‐tissue contrast and excellent three‐dimensional resolution. To enable the transition of this technology to clinical practice, dedicated data‐processing algorithms must be developed in order to effectively retrieve the signals of interest from the measured raw data. METHODS: This article proposes a novel denoising algorithm that can cope with the high‐noise amplitudes and heteroscedasticity which arise in GI‐BCT when operated in a low‐dose regime to effectively regularize the ill‐conditioned GI‐BCT inverse problem. We present a data‐driven algorithm called INSIDEnet, which combines different ideas such as multiscale image processing, transform‐domain filtering, transform learning, and explicit orthogonality to build an Interpretable NonexpanSIve Data‐Efficient network (INSIDEnet). RESULTS: We apply the method to simulated breast phantom datasets and to real data acquired on a GI‐BCT prototype and show that the proposed algorithm outperforms traditional state‐of‐the‐art filters and is competitive with deep neural networks. The strong inductive bias given by the proposed model's architecture allows to reliably train the algorithm with very limited data while providing high model interpretability, thus offering a great advantage over classical convolutional neural networks (CNNs). CONCLUSIONS: The proposed INSIDEnet is highly data‐efficient, interpretable, and outperforms state‐of‐the‐art CNNs when trained on very limited training data. We expect the proposed method to become an important tool as part of a dedicated plug‐and‐play GI‐BCT reconstruction framework, needed to translate this promising technology to the clinics.
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spelling pubmed-93116862022-07-29 INSIDEnet: Interpretable NonexpanSIve Data‐Efficient network for denoising in grating interferometry breast CT van Gogh, Stefano Wang, Zhentian Rawlik, Michał Etmann, Christian Mukherjee, Subhadip Schönlieb, Carola‐Bibiane Angst, Florian Boss, Andreas Stampanoni, Marco Med Phys QUANTITATIVE IMAGING AND IMAGE PROCESSING PURPOSE: Breast cancer is the most common malignancy in women. Unfortunately, current breast imaging techniques all suffer from certain limitations: they are either not fully three dimensional, have an insufficient resolution or low soft‐tissue contrast. Grating interferometry breast computed tomography (GI‐BCT) is a promising X‐ray phase contrast modality that could overcome these limitations by offering high soft‐tissue contrast and excellent three‐dimensional resolution. To enable the transition of this technology to clinical practice, dedicated data‐processing algorithms must be developed in order to effectively retrieve the signals of interest from the measured raw data. METHODS: This article proposes a novel denoising algorithm that can cope with the high‐noise amplitudes and heteroscedasticity which arise in GI‐BCT when operated in a low‐dose regime to effectively regularize the ill‐conditioned GI‐BCT inverse problem. We present a data‐driven algorithm called INSIDEnet, which combines different ideas such as multiscale image processing, transform‐domain filtering, transform learning, and explicit orthogonality to build an Interpretable NonexpanSIve Data‐Efficient network (INSIDEnet). RESULTS: We apply the method to simulated breast phantom datasets and to real data acquired on a GI‐BCT prototype and show that the proposed algorithm outperforms traditional state‐of‐the‐art filters and is competitive with deep neural networks. The strong inductive bias given by the proposed model's architecture allows to reliably train the algorithm with very limited data while providing high model interpretability, thus offering a great advantage over classical convolutional neural networks (CNNs). CONCLUSIONS: The proposed INSIDEnet is highly data‐efficient, interpretable, and outperforms state‐of‐the‐art CNNs when trained on very limited training data. We expect the proposed method to become an important tool as part of a dedicated plug‐and‐play GI‐BCT reconstruction framework, needed to translate this promising technology to the clinics. John Wiley and Sons Inc. 2022-03-24 2022-06 /pmc/articles/PMC9311686/ /pubmed/35257395 http://dx.doi.org/10.1002/mp.15595 Text en © 2022 The Authors. Medical Physics published by Wiley Periodicals LLC on behalf of American Association of Physicists in Medicine. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle QUANTITATIVE IMAGING AND IMAGE PROCESSING
van Gogh, Stefano
Wang, Zhentian
Rawlik, Michał
Etmann, Christian
Mukherjee, Subhadip
Schönlieb, Carola‐Bibiane
Angst, Florian
Boss, Andreas
Stampanoni, Marco
INSIDEnet: Interpretable NonexpanSIve Data‐Efficient network for denoising in grating interferometry breast CT
title INSIDEnet: Interpretable NonexpanSIve Data‐Efficient network for denoising in grating interferometry breast CT
title_full INSIDEnet: Interpretable NonexpanSIve Data‐Efficient network for denoising in grating interferometry breast CT
title_fullStr INSIDEnet: Interpretable NonexpanSIve Data‐Efficient network for denoising in grating interferometry breast CT
title_full_unstemmed INSIDEnet: Interpretable NonexpanSIve Data‐Efficient network for denoising in grating interferometry breast CT
title_short INSIDEnet: Interpretable NonexpanSIve Data‐Efficient network for denoising in grating interferometry breast CT
title_sort insidenet: interpretable nonexpansive data‐efficient network for denoising in grating interferometry breast ct
topic QUANTITATIVE IMAGING AND IMAGE PROCESSING
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9311686/
https://www.ncbi.nlm.nih.gov/pubmed/35257395
http://dx.doi.org/10.1002/mp.15595
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