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Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy

SIGNIFICANCE: Pancreatic ductal adenocarcinoma (PDAC) is one of the leading causes of cancer deaths with a best median survival of only 40 to 50 months for localized disease despite multimodal treatment. The standard tissue differentiation method continues to be pathology with histological staining...

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Autores principales: Teske, Christian, Kahlert, Christoph, Welsch, Thilo, Liedel, Katja, Weitz, Jürgen, Uckermann, Ortrud, Steiner, Gerald
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9313287/
https://www.ncbi.nlm.nih.gov/pubmed/36399853
http://dx.doi.org/10.1117/1.JBO.27.7.075001
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author Teske, Christian
Kahlert, Christoph
Welsch, Thilo
Liedel, Katja
Weitz, Jürgen
Uckermann, Ortrud
Steiner, Gerald
author_facet Teske, Christian
Kahlert, Christoph
Welsch, Thilo
Liedel, Katja
Weitz, Jürgen
Uckermann, Ortrud
Steiner, Gerald
author_sort Teske, Christian
collection PubMed
description SIGNIFICANCE: Pancreatic ductal adenocarcinoma (PDAC) is one of the leading causes of cancer deaths with a best median survival of only 40 to 50 months for localized disease despite multimodal treatment. The standard tissue differentiation method continues to be pathology with histological staining analysis. Microscopic discrimination between inflammatory pancreatitis and malignancies is demanding. AIM: We aim to accurately distinguish native pancreatic tissue using infrared (IR) spectroscopy in a fast and label-free manner. APPROACH: Twenty cryopreserved human pancreatic tissue samples were collected from surgical resections. In total, more than 980,000 IR spectra were collected and analyzed using a MATLAB package. For differentiation of PDAC, pancreatitis, and normal tissue, a three-class training set for supervised classification was created with 25,000 spectra and the principal component analysis (PCA) score values for each cohort. Cross-validation was performed using the leave-one-out method. Validation of the algorithm was accomplished with 13 independent test samples. RESULTS: Reclassification of the training set and the independent test samples revealed an overall accuracy of more than 90% using a discrimination algorithm. CONCLUSION: IR spectroscopy in combination with PCA and supervised classification is an efficient analytical method to reliably distinguish between benign and malignant pancreatic tissues. It opens up a wide research field for oncological and surgical applications.
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spelling pubmed-93132872022-07-26 Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy Teske, Christian Kahlert, Christoph Welsch, Thilo Liedel, Katja Weitz, Jürgen Uckermann, Ortrud Steiner, Gerald J Biomed Opt General SIGNIFICANCE: Pancreatic ductal adenocarcinoma (PDAC) is one of the leading causes of cancer deaths with a best median survival of only 40 to 50 months for localized disease despite multimodal treatment. The standard tissue differentiation method continues to be pathology with histological staining analysis. Microscopic discrimination between inflammatory pancreatitis and malignancies is demanding. AIM: We aim to accurately distinguish native pancreatic tissue using infrared (IR) spectroscopy in a fast and label-free manner. APPROACH: Twenty cryopreserved human pancreatic tissue samples were collected from surgical resections. In total, more than 980,000 IR spectra were collected and analyzed using a MATLAB package. For differentiation of PDAC, pancreatitis, and normal tissue, a three-class training set for supervised classification was created with 25,000 spectra and the principal component analysis (PCA) score values for each cohort. Cross-validation was performed using the leave-one-out method. Validation of the algorithm was accomplished with 13 independent test samples. RESULTS: Reclassification of the training set and the independent test samples revealed an overall accuracy of more than 90% using a discrimination algorithm. CONCLUSION: IR spectroscopy in combination with PCA and supervised classification is an efficient analytical method to reliably distinguish between benign and malignant pancreatic tissues. It opens up a wide research field for oncological and surgical applications. Society of Photo-Optical Instrumentation Engineers 2022-07-25 2022-07 /pmc/articles/PMC9313287/ /pubmed/36399853 http://dx.doi.org/10.1117/1.JBO.27.7.075001 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle General
Teske, Christian
Kahlert, Christoph
Welsch, Thilo
Liedel, Katja
Weitz, Jürgen
Uckermann, Ortrud
Steiner, Gerald
Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy
title Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy
title_full Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy
title_fullStr Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy
title_full_unstemmed Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy
title_short Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy
title_sort label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy
topic General
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9313287/
https://www.ncbi.nlm.nih.gov/pubmed/36399853
http://dx.doi.org/10.1117/1.JBO.27.7.075001
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