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Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy
SIGNIFICANCE: Pancreatic ductal adenocarcinoma (PDAC) is one of the leading causes of cancer deaths with a best median survival of only 40 to 50 months for localized disease despite multimodal treatment. The standard tissue differentiation method continues to be pathology with histological staining...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9313287/ https://www.ncbi.nlm.nih.gov/pubmed/36399853 http://dx.doi.org/10.1117/1.JBO.27.7.075001 |
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author | Teske, Christian Kahlert, Christoph Welsch, Thilo Liedel, Katja Weitz, Jürgen Uckermann, Ortrud Steiner, Gerald |
author_facet | Teske, Christian Kahlert, Christoph Welsch, Thilo Liedel, Katja Weitz, Jürgen Uckermann, Ortrud Steiner, Gerald |
author_sort | Teske, Christian |
collection | PubMed |
description | SIGNIFICANCE: Pancreatic ductal adenocarcinoma (PDAC) is one of the leading causes of cancer deaths with a best median survival of only 40 to 50 months for localized disease despite multimodal treatment. The standard tissue differentiation method continues to be pathology with histological staining analysis. Microscopic discrimination between inflammatory pancreatitis and malignancies is demanding. AIM: We aim to accurately distinguish native pancreatic tissue using infrared (IR) spectroscopy in a fast and label-free manner. APPROACH: Twenty cryopreserved human pancreatic tissue samples were collected from surgical resections. In total, more than 980,000 IR spectra were collected and analyzed using a MATLAB package. For differentiation of PDAC, pancreatitis, and normal tissue, a three-class training set for supervised classification was created with 25,000 spectra and the principal component analysis (PCA) score values for each cohort. Cross-validation was performed using the leave-one-out method. Validation of the algorithm was accomplished with 13 independent test samples. RESULTS: Reclassification of the training set and the independent test samples revealed an overall accuracy of more than 90% using a discrimination algorithm. CONCLUSION: IR spectroscopy in combination with PCA and supervised classification is an efficient analytical method to reliably distinguish between benign and malignant pancreatic tissues. It opens up a wide research field for oncological and surgical applications. |
format | Online Article Text |
id | pubmed-9313287 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-93132872022-07-26 Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy Teske, Christian Kahlert, Christoph Welsch, Thilo Liedel, Katja Weitz, Jürgen Uckermann, Ortrud Steiner, Gerald J Biomed Opt General SIGNIFICANCE: Pancreatic ductal adenocarcinoma (PDAC) is one of the leading causes of cancer deaths with a best median survival of only 40 to 50 months for localized disease despite multimodal treatment. The standard tissue differentiation method continues to be pathology with histological staining analysis. Microscopic discrimination between inflammatory pancreatitis and malignancies is demanding. AIM: We aim to accurately distinguish native pancreatic tissue using infrared (IR) spectroscopy in a fast and label-free manner. APPROACH: Twenty cryopreserved human pancreatic tissue samples were collected from surgical resections. In total, more than 980,000 IR spectra were collected and analyzed using a MATLAB package. For differentiation of PDAC, pancreatitis, and normal tissue, a three-class training set for supervised classification was created with 25,000 spectra and the principal component analysis (PCA) score values for each cohort. Cross-validation was performed using the leave-one-out method. Validation of the algorithm was accomplished with 13 independent test samples. RESULTS: Reclassification of the training set and the independent test samples revealed an overall accuracy of more than 90% using a discrimination algorithm. CONCLUSION: IR spectroscopy in combination with PCA and supervised classification is an efficient analytical method to reliably distinguish between benign and malignant pancreatic tissues. It opens up a wide research field for oncological and surgical applications. Society of Photo-Optical Instrumentation Engineers 2022-07-25 2022-07 /pmc/articles/PMC9313287/ /pubmed/36399853 http://dx.doi.org/10.1117/1.JBO.27.7.075001 Text en © 2022 The Authors https://creativecommons.org/licenses/by/4.0/Published by SPIE under a Creative Commons Attribution 4.0 International License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | General Teske, Christian Kahlert, Christoph Welsch, Thilo Liedel, Katja Weitz, Jürgen Uckermann, Ortrud Steiner, Gerald Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy |
title | Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy |
title_full | Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy |
title_fullStr | Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy |
title_full_unstemmed | Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy |
title_short | Label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy |
title_sort | label-free differentiation of human pancreatic cancer, pancreatitis, and normal pancreatic tissue by molecular spectroscopy |
topic | General |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9313287/ https://www.ncbi.nlm.nih.gov/pubmed/36399853 http://dx.doi.org/10.1117/1.JBO.27.7.075001 |
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