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Alternative direct‐to‐amplification sperm cell lysis techniques for sexual assault sample processing

The prevalence of sexual assault cases and increasingly sensitive DNA analysis methods have resulted in sexual assault kit backlogs in the United States. Although traditional DNA extraction and purification utilizing detergents, proteinase K, and DTT have been the primary technique for lysing sperm...

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Autores principales: Schellhammer, Sarah K., Hudson, Brittany C., Cox, Jordan O., Dawson Green, Tracey
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9314082/
https://www.ncbi.nlm.nih.gov/pubmed/35285573
http://dx.doi.org/10.1111/1556-4029.15027
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author Schellhammer, Sarah K.
Hudson, Brittany C.
Cox, Jordan O.
Dawson Green, Tracey
author_facet Schellhammer, Sarah K.
Hudson, Brittany C.
Cox, Jordan O.
Dawson Green, Tracey
author_sort Schellhammer, Sarah K.
collection PubMed
description The prevalence of sexual assault cases and increasingly sensitive DNA analysis methods have resulted in sexual assault kit backlogs in the United States. Although traditional DNA extraction and purification utilizing detergents, proteinase K, and DTT have been the primary technique for lysing sperm cell fractions from these samples, it is labor‐intensive and inefficient regarding time and sperm DNA recovery – hindering the ability of forensic analysts to keep pace with evidence submissions. Thus, this study examined seven alternative sperm cell lysis techniques to develop a method that could efficiently lyse sperm and consistently generate high‐quality profiles while also reducing time, labor, and cost requirements. Microscopic examination of lysates indicated only Casework Direct and alkaline techniques could lyse all spermatozoa within samples, while quantification results demonstrated all methods performed comparably to the control method of forensicGEM™ Sperm (p > 0.06). Amplification with 0.25 ng DNA revealed that unpurified lysates from Casework Direct, alkaline, and NP‐40 techniques produced DNA profiles with acceptable mean STR peak heights and interlocus balance, both of which were similar to or better than the control. Overall, this study demonstrated the ability of Casework Direct, alkaline, and NP‐40 methods to efficiently lyse spermatozoa and provide high‐quality STR profiles despite the absence of a purification step. Ultimately, based on the data reported herein, alkaline lysis is the recommended alternative sperm lysis approach given its ability to generate high‐quality profiles, save time, and decrease the cost per reaction when compared to traditional sperm cell lysis methods.
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spelling pubmed-93140822022-07-30 Alternative direct‐to‐amplification sperm cell lysis techniques for sexual assault sample processing Schellhammer, Sarah K. Hudson, Brittany C. Cox, Jordan O. Dawson Green, Tracey J Forensic Sci Technical Notes The prevalence of sexual assault cases and increasingly sensitive DNA analysis methods have resulted in sexual assault kit backlogs in the United States. Although traditional DNA extraction and purification utilizing detergents, proteinase K, and DTT have been the primary technique for lysing sperm cell fractions from these samples, it is labor‐intensive and inefficient regarding time and sperm DNA recovery – hindering the ability of forensic analysts to keep pace with evidence submissions. Thus, this study examined seven alternative sperm cell lysis techniques to develop a method that could efficiently lyse sperm and consistently generate high‐quality profiles while also reducing time, labor, and cost requirements. Microscopic examination of lysates indicated only Casework Direct and alkaline techniques could lyse all spermatozoa within samples, while quantification results demonstrated all methods performed comparably to the control method of forensicGEM™ Sperm (p > 0.06). Amplification with 0.25 ng DNA revealed that unpurified lysates from Casework Direct, alkaline, and NP‐40 techniques produced DNA profiles with acceptable mean STR peak heights and interlocus balance, both of which were similar to or better than the control. Overall, this study demonstrated the ability of Casework Direct, alkaline, and NP‐40 methods to efficiently lyse spermatozoa and provide high‐quality STR profiles despite the absence of a purification step. Ultimately, based on the data reported herein, alkaline lysis is the recommended alternative sperm lysis approach given its ability to generate high‐quality profiles, save time, and decrease the cost per reaction when compared to traditional sperm cell lysis methods. John Wiley and Sons Inc. 2022-03-14 2022-07 /pmc/articles/PMC9314082/ /pubmed/35285573 http://dx.doi.org/10.1111/1556-4029.15027 Text en © 2022 The Authors. Journal of Forensic Sciences published by Wiley Periodicals LLC on behalf of American Academy of Forensic Sciences. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Technical Notes
Schellhammer, Sarah K.
Hudson, Brittany C.
Cox, Jordan O.
Dawson Green, Tracey
Alternative direct‐to‐amplification sperm cell lysis techniques for sexual assault sample processing
title Alternative direct‐to‐amplification sperm cell lysis techniques for sexual assault sample processing
title_full Alternative direct‐to‐amplification sperm cell lysis techniques for sexual assault sample processing
title_fullStr Alternative direct‐to‐amplification sperm cell lysis techniques for sexual assault sample processing
title_full_unstemmed Alternative direct‐to‐amplification sperm cell lysis techniques for sexual assault sample processing
title_short Alternative direct‐to‐amplification sperm cell lysis techniques for sexual assault sample processing
title_sort alternative direct‐to‐amplification sperm cell lysis techniques for sexual assault sample processing
topic Technical Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9314082/
https://www.ncbi.nlm.nih.gov/pubmed/35285573
http://dx.doi.org/10.1111/1556-4029.15027
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