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Identification and Comprehensive Genome-Wide Analysis of Glutathione S-Transferase Gene Family in Sweet Cherry (Prunus avium) and Their Expression Profiling Reveals a Likely Role in Anthocyanin Accumulation

Glutathione S-transferases (GSTs) in plants are multipurpose enzymes that are involved in growth and development and anthocyanins transportation. However, members of the GST gene family were not identified in sweet cherry (Prunus avium). To identify the GST genes in sweet cherry, a genome-wide analy...

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Autores principales: Sabir, Irfan Ali, Manzoor, Muhammad Aamir, Shah, Iftikhar Hussain, Liu, Xunju, Jiu, Songtao, Wang, Jiyuan, Alam, Pravej, Abdullah, Muhammad, Zhang, Caixi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9315441/
https://www.ncbi.nlm.nih.gov/pubmed/35903236
http://dx.doi.org/10.3389/fpls.2022.938800
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author Sabir, Irfan Ali
Manzoor, Muhammad Aamir
Shah, Iftikhar Hussain
Liu, Xunju
Jiu, Songtao
Wang, Jiyuan
Alam, Pravej
Abdullah, Muhammad
Zhang, Caixi
author_facet Sabir, Irfan Ali
Manzoor, Muhammad Aamir
Shah, Iftikhar Hussain
Liu, Xunju
Jiu, Songtao
Wang, Jiyuan
Alam, Pravej
Abdullah, Muhammad
Zhang, Caixi
author_sort Sabir, Irfan Ali
collection PubMed
description Glutathione S-transferases (GSTs) in plants are multipurpose enzymes that are involved in growth and development and anthocyanins transportation. However, members of the GST gene family were not identified in sweet cherry (Prunus avium). To identify the GST genes in sweet cherry, a genome-wide analysis was conducted. In this study, we identified 67 GST genes in P. avium genome and nomenclature according to chromosomal distribution. Phylogenetic tree analysis revealed that PavGST genes were classified into seven chief subfamily: TCHQD, Theta, Phi, Zeta, Lambda, DHAR, and Tau. The majority of the PavGST genes had a relatively well-maintained exon–intron and motif arrangement within the same group, according to gene structure and motif analyses. Gene structure (introns-exons) and conserved motif analysis revealed that the majority of the PavGST genes showed a relatively well-maintained motif and exons–introns configuration within the same group. The chromosomal localization, GO enrichment annotation, subcellular localization, syntenic relationship, Ka/Ks analysis, and molecular characteristics were accomplished using various bioinformatics tools. Mode of gene duplication showed that dispersed duplication might play a key role in the expansion of PavGST gene family. Promoter regions of PavGST genes contain numerous cis-regulatory components, which are involved in multiple stress responses, such as abiotic stress and phytohormones responsive factors. Furthermore, the expression profile of sweet cherry PavGSTs showed significant results under LED treatment. Our findings provide the groundwork for future research into induced LED anthocyanin and antioxidants deposition in sweet cherries.
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spelling pubmed-93154412022-07-27 Identification and Comprehensive Genome-Wide Analysis of Glutathione S-Transferase Gene Family in Sweet Cherry (Prunus avium) and Their Expression Profiling Reveals a Likely Role in Anthocyanin Accumulation Sabir, Irfan Ali Manzoor, Muhammad Aamir Shah, Iftikhar Hussain Liu, Xunju Jiu, Songtao Wang, Jiyuan Alam, Pravej Abdullah, Muhammad Zhang, Caixi Front Plant Sci Plant Science Glutathione S-transferases (GSTs) in plants are multipurpose enzymes that are involved in growth and development and anthocyanins transportation. However, members of the GST gene family were not identified in sweet cherry (Prunus avium). To identify the GST genes in sweet cherry, a genome-wide analysis was conducted. In this study, we identified 67 GST genes in P. avium genome and nomenclature according to chromosomal distribution. Phylogenetic tree analysis revealed that PavGST genes were classified into seven chief subfamily: TCHQD, Theta, Phi, Zeta, Lambda, DHAR, and Tau. The majority of the PavGST genes had a relatively well-maintained exon–intron and motif arrangement within the same group, according to gene structure and motif analyses. Gene structure (introns-exons) and conserved motif analysis revealed that the majority of the PavGST genes showed a relatively well-maintained motif and exons–introns configuration within the same group. The chromosomal localization, GO enrichment annotation, subcellular localization, syntenic relationship, Ka/Ks analysis, and molecular characteristics were accomplished using various bioinformatics tools. Mode of gene duplication showed that dispersed duplication might play a key role in the expansion of PavGST gene family. Promoter regions of PavGST genes contain numerous cis-regulatory components, which are involved in multiple stress responses, such as abiotic stress and phytohormones responsive factors. Furthermore, the expression profile of sweet cherry PavGSTs showed significant results under LED treatment. Our findings provide the groundwork for future research into induced LED anthocyanin and antioxidants deposition in sweet cherries. Frontiers Media S.A. 2022-07-12 /pmc/articles/PMC9315441/ /pubmed/35903236 http://dx.doi.org/10.3389/fpls.2022.938800 Text en Copyright © 2022 Sabir, Manzoor, Shah, Liu, Jiu, Wang, Alam, Abdullah and Zhang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Sabir, Irfan Ali
Manzoor, Muhammad Aamir
Shah, Iftikhar Hussain
Liu, Xunju
Jiu, Songtao
Wang, Jiyuan
Alam, Pravej
Abdullah, Muhammad
Zhang, Caixi
Identification and Comprehensive Genome-Wide Analysis of Glutathione S-Transferase Gene Family in Sweet Cherry (Prunus avium) and Their Expression Profiling Reveals a Likely Role in Anthocyanin Accumulation
title Identification and Comprehensive Genome-Wide Analysis of Glutathione S-Transferase Gene Family in Sweet Cherry (Prunus avium) and Their Expression Profiling Reveals a Likely Role in Anthocyanin Accumulation
title_full Identification and Comprehensive Genome-Wide Analysis of Glutathione S-Transferase Gene Family in Sweet Cherry (Prunus avium) and Their Expression Profiling Reveals a Likely Role in Anthocyanin Accumulation
title_fullStr Identification and Comprehensive Genome-Wide Analysis of Glutathione S-Transferase Gene Family in Sweet Cherry (Prunus avium) and Their Expression Profiling Reveals a Likely Role in Anthocyanin Accumulation
title_full_unstemmed Identification and Comprehensive Genome-Wide Analysis of Glutathione S-Transferase Gene Family in Sweet Cherry (Prunus avium) and Their Expression Profiling Reveals a Likely Role in Anthocyanin Accumulation
title_short Identification and Comprehensive Genome-Wide Analysis of Glutathione S-Transferase Gene Family in Sweet Cherry (Prunus avium) and Their Expression Profiling Reveals a Likely Role in Anthocyanin Accumulation
title_sort identification and comprehensive genome-wide analysis of glutathione s-transferase gene family in sweet cherry (prunus avium) and their expression profiling reveals a likely role in anthocyanin accumulation
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9315441/
https://www.ncbi.nlm.nih.gov/pubmed/35903236
http://dx.doi.org/10.3389/fpls.2022.938800
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