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Combining symbolic regression with the Cox proportional hazards model improves prediction of heart failure deaths
BACKGROUND: Heart failure is a clinical syndrome characterised by a reduced ability of the heart to pump blood. Patients with heart failure have a high mortality rate, and physicians need reliable prognostic predictions to make informed decisions about the appropriate application of devices, transpl...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9316394/ https://www.ncbi.nlm.nih.gov/pubmed/35879758 http://dx.doi.org/10.1186/s12911-022-01943-1 |
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author | Wilstrup, Casper Cave, Chris |
author_facet | Wilstrup, Casper Cave, Chris |
author_sort | Wilstrup, Casper |
collection | PubMed |
description | BACKGROUND: Heart failure is a clinical syndrome characterised by a reduced ability of the heart to pump blood. Patients with heart failure have a high mortality rate, and physicians need reliable prognostic predictions to make informed decisions about the appropriate application of devices, transplantation, medications, and palliative care. In this study, we demonstrate that combining symbolic regression with the Cox proportional hazards model improves the ability to predict death due to heart failure compared to using the Cox proportional hazards model alone. METHODS: We used a newly invented symbolic regression method called the QLattice to analyse a data set of medical records for 299 Pakistani patients diagnosed with heart failure. The QLattice identified non-linear mathematical transformations of the available covariates, which we then used in a Cox model to predict survival. RESULTS: An exponential function of age, the inverse of ejection fraction, and the inverse of serum creatinine were identified as the best risk factors for predicting heart failure deaths. A Cox model fitted on these transformed covariates had improved predictive performance compared with a Cox model on the same covariates without mathematical transformations. CONCLUSION: Symbolic regression is a way to find transformations of covariates from patients’ medical records which can improve the performance of survival regression models. At the same time, these simple functions are intuitive and easy to apply in clinical settings. The direct interpretability of the simple forms may help researchers gain new insights into the actual causal pathways leading to deaths. |
format | Online Article Text |
id | pubmed-9316394 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-93163942022-07-27 Combining symbolic regression with the Cox proportional hazards model improves prediction of heart failure deaths Wilstrup, Casper Cave, Chris BMC Med Inform Decis Mak Research BACKGROUND: Heart failure is a clinical syndrome characterised by a reduced ability of the heart to pump blood. Patients with heart failure have a high mortality rate, and physicians need reliable prognostic predictions to make informed decisions about the appropriate application of devices, transplantation, medications, and palliative care. In this study, we demonstrate that combining symbolic regression with the Cox proportional hazards model improves the ability to predict death due to heart failure compared to using the Cox proportional hazards model alone. METHODS: We used a newly invented symbolic regression method called the QLattice to analyse a data set of medical records for 299 Pakistani patients diagnosed with heart failure. The QLattice identified non-linear mathematical transformations of the available covariates, which we then used in a Cox model to predict survival. RESULTS: An exponential function of age, the inverse of ejection fraction, and the inverse of serum creatinine were identified as the best risk factors for predicting heart failure deaths. A Cox model fitted on these transformed covariates had improved predictive performance compared with a Cox model on the same covariates without mathematical transformations. CONCLUSION: Symbolic regression is a way to find transformations of covariates from patients’ medical records which can improve the performance of survival regression models. At the same time, these simple functions are intuitive and easy to apply in clinical settings. The direct interpretability of the simple forms may help researchers gain new insights into the actual causal pathways leading to deaths. BioMed Central 2022-07-25 /pmc/articles/PMC9316394/ /pubmed/35879758 http://dx.doi.org/10.1186/s12911-022-01943-1 Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Wilstrup, Casper Cave, Chris Combining symbolic regression with the Cox proportional hazards model improves prediction of heart failure deaths |
title | Combining symbolic regression with the Cox proportional hazards model improves prediction of heart failure deaths |
title_full | Combining symbolic regression with the Cox proportional hazards model improves prediction of heart failure deaths |
title_fullStr | Combining symbolic regression with the Cox proportional hazards model improves prediction of heart failure deaths |
title_full_unstemmed | Combining symbolic regression with the Cox proportional hazards model improves prediction of heart failure deaths |
title_short | Combining symbolic regression with the Cox proportional hazards model improves prediction of heart failure deaths |
title_sort | combining symbolic regression with the cox proportional hazards model improves prediction of heart failure deaths |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9316394/ https://www.ncbi.nlm.nih.gov/pubmed/35879758 http://dx.doi.org/10.1186/s12911-022-01943-1 |
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